Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan3g0056 ATGGGTCAGTGTCTGAGTTGCAGAGTTAACCATAATGAACATGTTCTATTCACTGCAGTTCAGCATGGTGATTTTCAAACAGTTATAACTCTTTTACAAGATGAACCTTCTCTTTTGTACCACACCACTCTCTATGATCGTCACTCTCCTCTTCATATTGCTGCTGCCAATGGCCAGATCCAGATTTTGTCAAGACTTTTACATGGATCTGTTAATCCAGATGTTTTAAATCGCCAAAAGCAGACTCCACTTATGTTGGCAGCAATGCATGGAAAAATCGATTGTGTGGAGAAGCTTCTTGAAGCTGGAGCAAATGTATTAATGTTTGATGCGATTTATGGAAGAACATGCTTGCACTATGCTGCATATTATGGCCATTCTTCTTGCCTTAAAGCAATTCTTTCGGCTGCTAAATCTAGTCCGGTGGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTAGAGATGGAAAGGGTGCAACACCGTTGCACTTGGCAGCTCGTCAAAGACGGCCTGAATGTGTACATATTCTCTTAGATAGTGGTGCTCTTGTTTGTGCTTCTACTGGTGGATATGGCTGCCCTGGGAGCACTCCTCTTCATCTAGCAGCTAGAGGTGGATCCATGGATTGCATCCGCGAATTGTTGGCATGGGGCGCAGATCGACTTTATCGCGATGCATCAGGGAGGATACCATATCTTGTTGCTCTGAAACACAGACATGTAGCATGTGCATCATTGCTAAATCCAACATCTGCTGAGCCTCTTGTTTGGCCATCTCCGTTGAAGTTCATCAGCGAACTTAACGCAGAAGCCAAAGCTTTATTAGAACAAGCCTTGATGGATGCTAACAAGGAAAGGGAGAAAAACATGTTGAAGGGGGGTGCTTACATTCCACCTTCTTCGCATTCTGATGGGGTAGATGACGATATCTCCGAGGTTAGTGAATCAGAATTATGCTGCATCTGCTTTGAGCAAGTATGCACAATTGAAGTTCAGAATTGTGGCCACCAAATGTGTGCACAATGCACACTAGCCCTTTGTTGCCACAACAAGCCTAATCCCACAACTGCTTCTCTTACACCACCAGTGTGTCCATTTTGTAGAAGTGTTATAGCTAGACTAGTTGTTGTAAAAATAGAAAATCATCATGATACTGAAGCTGATGAAGATTGTGTTGATATGAATTGTTCTAAACTAAGTAAGTCAAAGAAATCAAGAAACTTGAATGATGGAGGTAGCAGTAGTTTTAAGGGATTATCATTTGGAAAATTGGGATGCTGCAACTCTGGAAGAATTAGTGCTGAAAATGAGTGGGTTGATAAACAGTGA 1332 0.4227 MGQCLSCRVNHNEHVLFTAVQHGDFQTVITLLQDEPSLLYHTTLYDRHSPLHIAAANGQIQILSRLLHGSVNPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDAIYGRTCLHYAAYYGHSSCLKAILSAAKSSPVAASWGFARFVNIRDGKGATPLHLAARQRRPECVHILLDSGALVCASTGGYGCPGSTPLHLAARGGSMDCIRELLAWGADRLYRDASGRIPYLVALKHRHVACASLLNPTSAEPLVWPSPLKFISELNAEAKALLEQALMDANKEREKNMLKGGAYIPPSSHSDGVDDDISEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPTTASLTPPVCPFCRSVIARLVVVKIENHHDTEADEDCVDMNCSKLSKSKKSRNLNDGGSSSFKGLSFGKLGCCNSGRISAENEWVDKQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan3g0056 443 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Lan3g0056 443 Pfam Ankyrin repeats (3 copies) 113 184 IPR002110 GO:0005515
Lan3g0056 443 Pfam Ankyrin repeats (3 copies) 16 110 IPR002110 GO:0005515
Lan3g0056 443 SUPERFAMILY RING/U-box 314 374 - -
Lan3g0056 443 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
Lan3g0056 443 Pfam Ankyrin repeat 196 222 IPR002110 GO:0005515
Lan3g0056 443 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Lan3g0056 443 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Lan3g0056 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lan3g0056 443 SMART ANK_2a 195 224 IPR002110 GO:0005515
Lan3g0056 443 SMART ANK_2a 158 187 IPR002110 GO:0005515
Lan3g0056 443 SMART ANK_2a 46 75 IPR002110 GO:0005515
Lan3g0056 443 SMART ANK_2a 228 257 IPR002110 GO:0005515
Lan3g0056 443 SMART ANK_2a 11 40 IPR002110 GO:0005515
Lan3g0056 443 SMART ANK_2a 113 143 IPR002110 GO:0005515
Lan3g0056 443 SMART ANK_2a 79 108 IPR002110 GO:0005515
Lan3g0056 443 Gene3D - 10 145 IPR036770 -
Lan3g0056 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Lan3g0056 443 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Lan3g0056 443 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Lan3g0056 443 SUPERFAMILY Ankyrin repeat 10 251 IPR036770 -
Lan3g0056 443 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Lan3g0056 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Lan3g0056 443 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Lan3g0056 443 Coils Coil 269 289 - -
Lan3g0056 443 Gene3D - 146 298 IPR036770 -
Lan3g0056 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan3g0056 Lan-Chr3 380861 407289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan3g0056 78 248 Miscellaneous Gene Families AT5G02620 25.871 1.29e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan3g0056 - - gmx:100786708 731.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0096 10 561983 565244 Lan3g0056 3 380861 407289 LSH
Lan3g0056 3 380861 407289 Lan7g0243 7 1514965 1518061 PCT
Lan3g0056 3 380861 407289 Lan13g0331 13 2184779 2188043 PCT
Lan7g0243 7 1514965 1518061 Lan3g0056 3 380861 407289 PCT
Lan13g0331 13 2184779 2188043 Lan3g0056 3 380861 407289 PCT