Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0096 ATGGGTCAGGGTCTGAGTTGCAGAGCTAACCACAATGAACACGGTCTCTTCACTGCGGTCCAGCATGGTGACCTTCAAACAGTGGCAACTCTTCTTCAAGCTGACCCTTCTCTTTTGCACCACACCACTGTCTATGATCGCCACTCTCCTCTTCATATTGCTGCTGCCAATGGCCAGATCCAGATTCTATCAAGGCTTTTACATGGATCTGTTAACCCAGATGTTTTAAATCGTCAAAAGCAGACTCCGCTTATGTTGGCAGCAATGCACGGTAAAATCGATTGTGTGGAGAAGCTCCTTGAAGCTGGAGCTAATGTATTAATGTTTGATGCTATATATGGAAGAACCTGCTTGCACTATGCCGCATACTATGGCCATTCTTCATGTCTTAAAGCAATTCTTTCAGCTGCTCAATATAGTCCAGTTGCTGCTTCTTGGGGATTTGCTCGGTTTGTGAATATTCGAGATGGAAAGGGCGCAACTCCATTGCACTTGGCAGCTCGACAAAGACGGCCGGACTGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTTCAACCGGTGGATATGGCTTTCCTGGGAGCACTCCCCTTCATCTAGCAGCTAGAGGTGGATCTTTGGATTGCATTCGTGAATTGTTAGCGTGGGGTGCAGATCGTCTTCATCGCGATGCATCAGGGAGGATACCATATGTTGTTGCTCTGAAACACAGACATGGAGCATGTGCATCATTGCTAAATCCCACATCCGCAGAGCCTCTTGTGTGGCCATCTCCGTTGAAGTTCATCAGCGAGCTTAATCCGGAAGCAAAAGCTTTATTAGAACAGGCCTTGATGGAGGCTAACAAGGAAAGGGAGAAAAACATATTAAAGGGGAGTGCTTATATTCCGTCTCCATCACATTCTGATGAGGTAGATGACGATATCTCTGAGGTTAGCGAGTCAGAATTATGCTGCATCTGCTTTGAACAGGTATGCACAATTGAAGTCCAAAATTGTGGCCACCAAATGTGTGCACAATGCACACTAGCCCTTTGTTGCCACAACAAGCCTAACCCTATCACCACTTGTCTTACTCCACCGGTATGTCCATTTTGTCGAAGCGCGATAGCTAGACTAGTGGTTGTGAAGATAGAAAATCATCATGATATTGAAGCTGATCAAGATAGTGTTGATGTTAATTGTTCCAAGCTAAGCAAATCAAAGAAGTCCAGAAACTTGAACGACGGCGGTAGCAGCAGCTTCAAGGGGTTATCATTCGGAAAATTGGGTGGCCGCAGCTCCGGAAGGATTGCTGCTGAAAATGAATGGGTTGACAAACAGTGA 1332 0.4572 MGQGLSCRANHNEHGLFTAVQHGDLQTVATLLQADPSLLHHTTVYDRHSPLHIAAANGQIQILSRLLHGSVNPDVLNRQKQTPLMLAAMHGKIDCVEKLLEAGANVLMFDAIYGRTCLHYAAYYGHSSCLKAILSAAQYSPVAASWGFARFVNIRDGKGATPLHLAARQRRPDCVHILLDSGALVCASTGGYGFPGSTPLHLAARGGSLDCIRELLAWGADRLHRDASGRIPYVVALKHRHGACASLLNPTSAEPLVWPSPLKFISELNPEAKALLEQALMEANKEREKNILKGSAYIPSPSHSDEVDDDISEVSESELCCICFEQVCTIEVQNCGHQMCAQCTLALCCHNKPNPITTCLTPPVCPFCRSAIARLVVVKIENHHDIEADQDSVDVNCSKLSKSKKSRNLNDGGSSSFKGLSFGKLGGRSSGRIAAENEWVDKQ* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0096 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 302 388 IPR013083 -
Lan10g0096 443 ProSiteProfiles Ankyrin repeat profile. 79 111 IPR002110 GO:0005515
Lan10g0096 443 PANTHER HOMEOBOX PROTEIN WARIAI 1 443 - -
Lan10g0096 443 Gene3D - 10 144 IPR036770 -
Lan10g0096 443 ProSiteProfiles Ankyrin repeat region circular profile. 195 221 - -
Lan10g0096 443 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 443 - -
Lan10g0096 443 ProSiteProfiles Ankyrin repeat region circular profile. 46 78 - -
Lan10g0096 443 ProSiteProfiles Ankyrin repeat profile. 195 227 IPR002110 GO:0005515
Lan10g0096 443 ProSiteProfiles Ankyrin repeat region circular profile. 158 183 - -
Lan10g0096 443 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lan10g0096 443 SUPERFAMILY RING/U-box 319 374 - -
Lan10g0096 443 ProSiteProfiles Ankyrin repeat profile. 158 190 IPR002110 GO:0005515
Lan10g0096 443 ProSiteProfiles Ankyrin repeat profile. 46 78 IPR002110 GO:0005515
Lan10g0096 443 ProSiteProfiles Ankyrin repeat region circular profile. 79 106 - -
Lan10g0096 443 MobiDBLite consensus disorder prediction 403 429 - -
Lan10g0096 443 SMART ANK_2a 46 75 IPR002110 GO:0005515
Lan10g0096 443 SMART ANK_2a 11 40 IPR002110 GO:0005515
Lan10g0096 443 SMART ANK_2a 113 143 IPR002110 GO:0005515
Lan10g0096 443 SMART ANK_2a 158 187 IPR002110 GO:0005515
Lan10g0096 443 SMART ANK_2a 79 108 IPR002110 GO:0005515
Lan10g0096 443 SMART ANK_2a 195 224 IPR002110 GO:0005515
Lan10g0096 443 Pfam Ankyrin repeats (3 copies) 113 184 IPR002110 GO:0005515
Lan10g0096 443 Pfam Ankyrin repeats (3 copies) 16 110 IPR002110 GO:0005515
Lan10g0096 443 Pfam Ankyrin repeat 196 226 IPR002110 GO:0005515
Lan10g0096 443 SUPERFAMILY Ankyrin repeat 11 251 IPR036770 -
Lan10g0096 443 Gene3D - 145 298 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0096 Lan-Chr10 561983 565244 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0096 13 212 Miscellaneous Gene Families AT5G02620 30.097 5.63e-17 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0096 - - gmx:100786708 734.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0096 10 561983 565244 Lan3g0056 3 380861 407289 LSH
Lan10g0096 10 561983 565244 Lan7g0243 7 1514965 1518061 PCT
Lan10g0096 10 561983 565244 Lan13g0331 13 2184779 2188043 PCT
Lan7g0243 7 1514965 1518061 Lan10g0096 10 561983 565244 PCT
Lan13g0331 13 2184779 2188043 Lan10g0096 10 561983 565244 PCT