Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0331 ATGGGTCAGGGTTTGAGTTGCAGAGGAAGCCATGAACATGGCCTCTTTCGTGCTGTTCAGCATGGTGATTTAGAAACTTTTGCAACTCTTTTAGAGACATGCCCTTCTCTCATGCACCGTACTACTGTTTATGATCGCCACTCTCCTCTTCATATTGCTGCTGCTAATGGCCAGATCCAGATTTTAACAATGCTTTTAAATGGATCTGTGAATCCAGATGTTTTGAATCGCCAAAAACAGACTCCGCTTATGCTGGCAGCAATGCACGGAAAGATTGCATGTGTGGAAAAGCTACTTGAAGCTGGTGCTAATGTATTAATGTTTGATTCAGTTTATGGAAGAACCTCCTTGCATTATGCTGCATACTATGGCCATTCTTCTTGCCTTAAGGCAATTCTTTCAACTGCTCAATCTAGTCCAGTAGCTGCTTCTTGGGGGTATGCTCGGTTTGTGAATATTAGAGATGGCAGGGGAGCAACACCATTGCACTTGGCAGCACGTCAAAGACAGCCTGAATGTGTACATATTCTATTAGACAGTGGAGCTCTTGTTTGTGCTCCTACTGGAAGATATGGCTGTCCTGGAAGCACAGCTCTTCATCTAGCGGCTAGAGGGGGATCTCTGGATTGCATCCGTCCACTGTTGGCTTGGGGTGCCGATCGTCTTCAACGTGATACATCTGGGAGGATACCTTATATAGTTGCTCTGAAACACAAACATGGTGCATGTGCAGCATTGCTGAATCCTACATCTGCAGAGCCTCTTGTCTGGCCATTACCTTTGAAAGTCATCAGTGAACTTAATCCGGAAGCAAAAGCTTTATTAGAGCGTGTGCTGATAGACGCAAACAAGGAAAGGGAGAAGAACATATTGAAGGGTACTGCTTACTCTCTCCCATCTCCAATGCACTCTGATGTGGTAGATGACAATATATCTGAGGTTAGTGAGACCGAATTATGCTGCATCTGCTTTGAGCAGGTATGCACAATTGAAGTTCAGGACTGTGGTCACCAGATGTGTGCACAATGCACATTAGCCCTATGTTGCCACAACAAGCCGAACCCTACCACTGCTTGTCTTACCCCTCCACTTTGTCCATTCTGCCGAAGCACCATCGCCAGACTTGTGGTTATCCAGATGGAAGAAAGTCGTGATGACATTGATCAAGATGTCCTCGATATCAATGGTTCCAAGATAAGCAAGTCATGGAAATCGCGAAACTTAAACGAAGGTGATAGCAGCAGCTTCAAGGGAGTAACCACTATCGGTTCATTTGGAAAGATGGGTGGCCGAAGTTCTGGAAGGATTACTGCTGAAAATGAGTGGGTTGATAATAAACAACAGTGA 1347 0.4506 MGQGLSCRGSHEHGLFRAVQHGDLETFATLLETCPSLMHRTTVYDRHSPLHIAAANGQIQILTMLLNGSVNPDVLNRQKQTPLMLAAMHGKIACVEKLLEAGANVLMFDSVYGRTSLHYAAYYGHSSCLKAILSTAQSSPVAASWGYARFVNIRDGRGATPLHLAARQRQPECVHILLDSGALVCAPTGRYGCPGSTALHLAARGGSLDCIRPLLAWGADRLQRDTSGRIPYIVALKHKHGACAALLNPTSAEPLVWPLPLKVISELNPEAKALLERVLIDANKEREKNILKGTAYSLPSPMHSDVVDDNISEVSETELCCICFEQVCTIEVQDCGHQMCAQCTLALCCHNKPNPTTACLTPPLCPFCRSTIARLVVIQMEESRDDIDQDVLDINGSKISKSWKSRNLNEGDSSSFKGVTTIGSFGKMGGRSSGRITAENEWVDNKQQ* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0331 448 ProSiteProfiles Ankyrin repeat region circular profile. 78 105 - -
Lan13g0331 448 ProSiteProfiles Zinc finger RING-type profile. 320 369 IPR001841 -
Lan13g0331 448 SMART ANK_2a 157 186 IPR002110 GO:0005515
Lan13g0331 448 SMART ANK_2a 112 142 IPR002110 GO:0005515
Lan13g0331 448 SMART ANK_2a 194 223 IPR002110 GO:0005515
Lan13g0331 448 SMART ANK_2a 78 107 IPR002110 GO:0005515
Lan13g0331 448 SMART ANK_2a 10 39 IPR002110 GO:0005515
Lan13g0331 448 SMART ANK_2a 45 74 IPR002110 GO:0005515
Lan13g0331 448 Pfam Ankyrin repeat 195 225 IPR002110 GO:0005515
Lan13g0331 448 SUPERFAMILY Ankyrin repeat 15 250 IPR036770 -
Lan13g0331 448 PANTHER HOMEOBOX PROTEIN WARIAI 1 445 - -
Lan13g0331 448 ProSiteProfiles Ankyrin repeat region circular profile. 157 182 - -
Lan13g0331 448 Pfam Ankyrin repeats (3 copies) 112 182 IPR002110 GO:0005515
Lan13g0331 448 Pfam Ankyrin repeats (3 copies) 15 109 IPR002110 GO:0005515
Lan13g0331 448 ProSiteProfiles Ankyrin repeat region circular profile. 45 77 - -
Lan13g0331 448 Gene3D - 8 144 IPR036770 -
Lan13g0331 448 ProSiteProfiles Ankyrin repeat profile. 157 182 IPR002110 GO:0005515
Lan13g0331 448 ProSiteProfiles Ankyrin repeat profile. 194 226 IPR002110 GO:0005515
Lan13g0331 448 ProSiteProfiles Ankyrin repeat profile. 45 77 IPR002110 GO:0005515
Lan13g0331 448 Gene3D - 145 250 IPR036770 -
Lan13g0331 448 PANTHER UBIQUITIN-PROTEIN LIGASE XBAT31, PUTATIVE-RELATED 1 445 - -
Lan13g0331 448 MobiDBLite consensus disorder prediction 427 448 - -
Lan13g0331 448 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 303 391 IPR013083 -
Lan13g0331 448 SUPERFAMILY RING/U-box 319 375 - -
Lan13g0331 448 ProSiteProfiles Ankyrin repeat region circular profile. 194 220 - -
Lan13g0331 448 ProSiteProfiles Ankyrin repeat profile. 78 110 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0331 Lan-Chr13 2184779 2188043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0331 74 262 Miscellaneous Gene Families AT3G12360 24.793 7.03e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0331 - - gmx:100800611 760.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0243 7 1514965 1518061 Lan13g0331 13 2184779 2188043 LSH
Lan10g0096 10 561983 565244 Lan13g0331 13 2184779 2188043 PCT
Lan3g0056 3 380861 407289 Lan13g0331 13 2184779 2188043 PCT
Lan13g0331 13 2184779 2188043 Lan10g0096 10 561983 565244 PCT
Lan13g0331 13 2184779 2188043 Lan3g0056 3 380861 407289 PCT