Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g1002 ATGTCCAGTAAGAAGGTCAAGGGCCTTCTTAGAGGCTTTAAATACATATCTCAAATATTTGAAAATGAAAAAGAAGAAGAAATACAGATTGGAAATCCAACGGATGTAAAGCATGTGGCCCACATAGGATGGGATGGTCCTTCTGTAAATACTCCTAGTTGGATGAACGAATTTAAATCTTCTCCGAGACATGCATCAACACCTTTAGATTTAAATGGAGAGCTTCAACATATAGAACAAGATAATTCAGTCAAATGGGTCTCCGAAGTTTCAAGGAGAGGTTCAAGACATGTGAACGCTAGGGGATCAAAAGTATCAACTAACAACATGACGGATTCCCCCACAAAGGAAAAGGCAAACAAAACAAGGCAAACAAGAAAATCATCCAAACTCAAAGATTCTTTAGATGAATCTAACCCAACCCAACAAGTTATACAGTTGGATGCGTTCCAAGGGGATGAATCATCAACAAATAACTCACTCGACATTCCCAAAAAGTCTCGTCGGAAGAAATTGAAAGATAATTCTAATTTCGGCGAGTCATCTAAATTGAGATCAAAAGACCAACATACGGAACTCGAATCTCCACCCGCGTTTGTATCCAAGCCTAGGCACAAACAAAGGTTCATGGAAGAAAGTGGACAATATGAAAGAGGAGTAAGTAGGATATCTTGA 675 0.3881 MSSKKVKGLLRGFKYISQIFENEKEEEIQIGNPTDVKHVAHIGWDGPSVNTPSWMNEFKSSPRHASTPLDLNGELQHIEQDNSVKWVSEVSRRGSRHVNARGSKVSTNNMTDSPTKEKANKTRQTRKSSKLKDSLDESNPTQQVIQLDAFQGDESSTNNSLDIPKKSRRKKLKDNSNFGESSKLRSKDQHTELESPPAFVSKPRHKQRFMEESGQYERGVSRIS* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g1002 224 CDD CRIB 28 61 - -
Lan20g1002 224 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC8 6 190 IPR044510 -
Lan20g1002 224 Gene3D CRIB domain 23 61 IPR036936 -
Lan20g1002 224 MobiDBLite consensus disorder prediction 199 215 - -
Lan20g1002 224 MobiDBLite consensus disorder prediction 100 115 - -
Lan20g1002 224 MobiDBLite consensus disorder prediction 163 192 - -
Lan20g1002 224 SMART PBD_5 30 61 IPR000095 -
Lan20g1002 224 MobiDBLite consensus disorder prediction 135 162 - -
Lan20g1002 224 Pfam P21-Rho-binding domain 29 77 IPR000095 -
Lan20g1002 224 MobiDBLite consensus disorder prediction 116 134 - -
Lan20g1002 224 ProSiteProfiles CRIB domain profile. 30 43 IPR000095 -
Lan20g1002 224 PANTHER CRIB DOMAIN-CONTAINING PROTEIN RIC7-LIKE ISOFORM X1 6 190 - -
Lan20g1002 224 MobiDBLite consensus disorder prediction 91 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g1002 Lan-Chr20 10747493 10749592 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g1002 - - cam:101503176 228.409
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g1353 11 20514402 20516472 Lan20g1002 20 10747493 10749592 LSH
Lan5g1236 5 26185878 26187062 Lan20g1002 20 10747493 10749592 PCT
Lan20g1002 20 10747493 10749592 Lan5g1236 5 26185878 26187062 PCT