Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan20g0535 ATGGCTATCACTTCTCCAAGTCTCAATGCCACAGAAAAGAAGTACTGGTGGCTCACAAACCGAAAGATTGCTGAGAAATATATTAGAGACGCACGAAACCTCATTGCTATGCAAGATGAGAATGCGATCGCTTCGGCTTTGAACCTTGTTGACGCGGCTTTGGCTTTATCTCCATGTTTAGACGAAGCTCTTGAACTCAGAGCAAGGTCTCTTTTATATCTGAGAAGGTTCAAAGAGGTAGCTGATATGCTTCAAGACTACATTCCAAGTATGAAAATAGCGAATGATGAATCAGGTTCTGCTTCTTCTGATAGTTCTTCACAAACACTTTCAAGGGAAGGTGTGAATCTTATATCATCATCAAATGAACGGGATCAGAGTTTCAAGTGCTTCTCTGTTTTAGACTTGAAGAAGAAAGTGATGGCAAGACTCAGTAAAAATTGCGAGAAAGAAGGGTACTGGAGATACGTGGTGTTAGGCAAAGCATGCTGCCATCTAGGACTAATGGAGGATGCAATGGTTCTTCTCCAAACCGGTAAACGCCTTGCCAGCGCCGCATTCCGCCGTGAGAGTATATGCTGGTCCGACGACAGCTTCTCATTATCAACCATCGGAATAAACTCACAACCCTTAACTCCACCACGAACTCCACTTACAGAGACCGAATCCATCACCCATCTCCTTACCCACATCAAGCTTCTCTTGCGCCGCCGCGCCTCCGCACTCGCTGCCCTTGACGCCGGCCTCCACTCAGAAGCTATCCGACACTTCTCGAAGCTTCTACACGGTCGCCGCTGCGTCCCACAAGGCTTCCTTGCTGAATGTTATATGCACAGAGCCAGTGCTTATTATTCTTCAGGTCGCATCGCTGAGTCTATAGGTGATTGCAACCGCACCCTGGCTCTGGACCCAACCTGCATCCAAGCTTTGGAAACCAGAGCCTCCATTTTAGAAACAATTCGTTGTTACACTGATTCATTACACGACCTTGAACACTTGAAGCTCTTATACAACACAATCTTGCGTGATAGAAAGCTTCCAGGTCCTGCATGGAAGCGCCACAATGTCAGATACAGGGAGATTCCAGGGAAACTCTGTGCACTTACAGTGAAAATTCAAGAATTGAAGAAAAGGGTTGCTTCTGGTGAAATTGGTAATGTGGATTATTATGCTTTGATTGGTTTAAGAAGAGGGTGTTCAAGATCAGAGTTACAAAGAGCTCACCTACTGTTATGTTTGAAGCATAAGCCTGATCAGGCTACGAATTTTATCGATAGGTGCGAGCTTGCAAATGATTGCGATCTCGAATCAGTGACCGACAGGGCTAAGATGTCAGCATTGTTGTTATATAGGTTGCTTCAAAAGGGTTATACTAATGTGATGCGAACTATTATGGATGAGGAAGCAGCTGAAAAACAAAGGAAGAAAGCTGCATTGGCTCTGCAATTGCAACAACAAGCTGCTGAAGTGAATGAGAAAAAAATAGTGGAAAATAATAATAAGTGCTTAATATCTTCTCCTTCTATTGTGGATCCATCAGTGTTTCAGGGGGTGTTTTGTCGTGATCTTTCTGTAGTTGGAAACTTGCTTTCACAAGGTGGATTCAACCGTCCAATTCCAATGAAGTATGAAGCTTTGAGTTGCTAG 1647 0.4414 MAITSPSLNATEKKYWWLTNRKIAEKYIRDARNLIAMQDENAIASALNLVDAALALSPCLDEALELRARSLLYLRRFKEVADMLQDYIPSMKIANDESGSASSDSSSQTLSREGVNLISSSNERDQSFKCFSVLDLKKKVMARLSKNCEKEGYWRYVVLGKACCHLGLMEDAMVLLQTGKRLASAAFRRESICWSDDSFSLSTIGINSQPLTPPRTPLTETESITHLLTHIKLLLRRRASALAALDAGLHSEAIRHFSKLLHGRRCVPQGFLAECYMHRASAYYSSGRIAESIGDCNRTLALDPTCIQALETRASILETIRCYTDSLHDLEHLKLLYNTILRDRKLPGPAWKRHNVRYREIPGKLCALTVKIQELKKRVASGEIGNVDYYALIGLRRGCSRSELQRAHLLLCLKHKPDQATNFIDRCELANDCDLESVTDRAKMSALLLYRLLQKGYTNVMRTIMDEEAAEKQRKKAALALQLQQQAAEVNEKKIVENNNKCLISSPSIVDPSVFQGVFCRDLSVVGNLLSQGGFNRPIPMKYEALSC* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan20g0535 548 Gene3D Tetratricopeptide repeat domain 216 346 IPR011990 GO:0005515
Lan20g0535 548 SMART tpr_5 273 306 IPR019734 GO:0005515
Lan20g0535 548 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN 1 548 - -
Lan20g0535 548 SUPERFAMILY TPR-like 240 334 IPR011990 GO:0005515
Lan20g0535 548 SUPERFAMILY Chaperone J-domain 384 422 IPR036869 -
Lan20g0535 548 CDD DnaJ 388 422 IPR001623 -
Lan20g0535 548 PANTHER - 1 548 - -
Lan20g0535 548 Coils Coil 469 489 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan20g0535 Lan-Chr20 3993074 4004486 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan20g0535 - - gmx:106797171 774.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan20g0535 20 3993074 4004486 Lan4g1373 4 22716878 22720843 LSH
Lan4g0950 4 11982308 11985229 Lan20g0535 20 3993074 4004486 PCT
Lan20g0535 20 3993074 4004486 Lan4g0950 4 11982308 11985229 PCT