Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1982 ATGGATTCTGATTCAATCACCACCACTACTCCAATTCCTTCTGCCACAAACGCTAAAAACCTGGGCAAGAAGAAAAAGATAAATTGGTCCTCTAAATTAAAGCAGAATAAGGTTGATGCGCGTCGTGAGCAGTGGCTATCTCAAGGTCCAGTGAAGAATATGGGGTGCAAGGATGGAGAGGACAATGACAGCCACGTGCTGCCACCACCACCGCATTCTGGGAAACACAGCAAAGACTTGCTGGAGAAATTGGAGATAAAGCGGGGTAGAGGCCAAGAGGACAATGGATCGATGATTCATCAAGACAGTGATTGGGAATCACTCACATTTAGTCCCACAAGTAATGTTTTTGGGATAAATTTTACCGGAAGTAGCAGCAGCAGAAGCAGTAGTTCTAGCAGTGCAGGTTGCTGCTCCGGTGATATCACAGAAGAAAATGAAGAAGAAGAAGAATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCAGCCAATGAAAATCAGCAGCATCAAAACCCTTGTCCTGATTCGCCCATTTCACCTATTGTGCAAACGGGTTCGCGTGATGGGTCGAGTTCAGGGGCGACGAATTCAAAACTAGAGAGTGCTAGATTGGTTCCTTGGGCATCTGGAAATACCCGAGCTTGGAGGGCTGATGATGCCTTTCGCCCTCGGAGCTTGCCCAATTTGTCTAAGCAGCTCAGTATGCCGAACCCAGATCGGTATTGTGGAGGAGGGTCTCCCTGGACTCGTCCTACAATGTCATGTTCATGTCCAATATGCTGCGAGGATCTTGATTTGACAGACTCAAGTTTTTTGCCTTGCCTGTGTGGGTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATCCTTGAGGAGGATGGTCGCTGTCCTGGGTGTAGGAAGCCCTATGAGTGTGAACCCGTTAAGACAGAGGCAAAGGTGACTGGTGGCAGCCTCACTCTTCGCTTGGTTCGTTCGTTTAGCTTGATCGAAAGGTCTTAA 1005 0.4806 MDSDSITTTTPIPSATNAKNLGKKKKINWSSKLKQNKVDARREQWLSQGPVKNMGCKDGEDNDSHVLPPPPHSGKHSKDLLEKLEIKRGRGQEDNGSMIHQDSDWESLTFSPTSNVFGINFTGSSSSRSSSSSSAGCCSGDITEENEEEEECLDDWEAVADALAANENQQHQNPCPDSPISPIVQTGSRDGSSSGATNSKLESARLVPWASGNTRAWRADDAFRPRSLPNLSKQLSMPNPDRYCGGGSPWTRPTMSCSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPVKTEAKVTGGSLTLRLVRSFSLIERS* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1982 334 MobiDBLite consensus disorder prediction 1 24 - -
Lan1g1982 334 Pfam RING/Ubox like zinc-binding domain 259 305 - -
Lan1g1982 334 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 12 331 - -
Lan1g1982 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 316 IPR013083 -
Lan1g1982 334 MobiDBLite consensus disorder prediction 1 79 - -
Lan1g1982 334 MobiDBLite consensus disorder prediction 123 147 - -
Lan1g1982 334 MobiDBLite consensus disorder prediction 168 199 - -
Lan1g1982 334 SUPERFAMILY RING/U-box 256 310 - -
Lan1g1982 334 MobiDBLite consensus disorder prediction 123 140 - -
Lan1g1982 334 CDD mRING-HC-C4C4_CNOT4 259 302 IPR039515 -
Lan1g1982 334 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 12 331 IPR039780 GO:0004842|GO:0030014
Lan1g1982 334 ProSiteProfiles Zinc finger RING-type profile. 259 301 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1982 Lan-Chr1 35000263 35001924 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1982 - - gmx:100792365 399.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0858 12 15650619 15652352 Lan1g1982 1 35000263 35001924 LSH
Lan1g1392 1 23654755 23656357 Lan1g1982 1 35000263 35001924 LSH