Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0858 ATGGATTCTGATTCAATGACCATCGCCACTCCCATTCCTTCTTCCACACGCGCTAAAAACCCGGGCAATAAGAAAAAGATTAACAGGTCTGCTAAATTAAAGCAGAATAAGATTCATGTGCGTCGTGAACAGTGGCTATCTCAAGCTGCAGTGAAGAATAAGGGGTGCAAGGATGGAGAGGACTATAGTAGCCATGTGCCGCCACTGCCGGCCGAGAAATACAGCAAATATTTGTTGGAGGAATTGGAGACAAAGCGGGGTAGAGACCAAGAGGACAATGGATTGGTGATTCATGAAGACAATTATTGGGAATCACCCACCAACAGTCCCACGAGTAATGTTTCTGGGACAAATTTCACCGGAAGTAGTAGCAGCAGAAGCAGTAGTTCTAGCACTGCAGGGTACTGCTCCGGGAATTTCACAGGAGAAGATGATGATGATGATGAAGAAGAAGATTGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGCTGCCAATGACAAGCAGCAGCGTCTAAACAATTGTATGGATTCGCCCCCTCAACCCATTGTGCAAATGGTATCGCCCGATGAGTTGAATTCAGGAGCTACAAAACTGGAGAGTGGTAGATTGGTTCCTTTAGCATCCGGCCATAACCGAGCTTGGAGGGCTGATGATGTTTTTCGCCCTCAGAGCTTGCCCAATTTATCTAAGCAGCTCAGTATGCCAAACCCAGATCGGTATTGCGGAGGAGGATCTCCCTGGACTCGCCCTATGATACCATCTTCATGTCCAATATGTTGTGAGGATCTTGATTTGACTGACTCAAGTTTTTTGCCTTGCCTGTGTGGGTTTCGGCTTTGTCTCTTTTGCCACAAGAGGATCCTCGAGGACGATGGTCGCTGTCCTGGGTGTAGGAAGCCCTATGAGTGTAAACCTGTTGAGACAGAGGCAAAAGTGGCTGGTGGCAGCCTCACTATTCGCTTGGCTCGTTCCTGTAGCTTGATTGAAAGGTCTTAA 1002 0.476 MDSDSMTIATPIPSSTRAKNPGNKKKINRSAKLKQNKIHVRREQWLSQAAVKNKGCKDGEDYSSHVPPLPAEKYSKYLLEELETKRGRDQEDNGLVIHEDNYWESPTNSPTSNVSGTNFTGSSSSRSSSSSTAGYCSGNFTGEDDDDDEEEDCLDDWEAVADALAANDKQQRLNNCMDSPPQPIVQMVSPDELNSGATKLESGRLVPLASGHNRAWRADDVFRPQSLPNLSKQLSMPNPDRYCGGGSPWTRPMIPSSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEDDGRCPGCRKPYECKPVETEAKVAGGSLTIRLARSCSLIERS* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0858 333 MobiDBLite consensus disorder prediction 51 71 - -
Lan12g0858 333 MobiDBLite consensus disorder prediction 1 37 - -
Lan12g0858 333 MobiDBLite consensus disorder prediction 84 98 - -
Lan12g0858 333 MobiDBLite consensus disorder prediction 84 153 - -
Lan12g0858 333 CDD mRING-HC-C4C4_CNOT4 258 301 IPR039515 -
Lan12g0858 333 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 254 315 IPR013083 -
Lan12g0858 333 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 18 330 IPR039780 GO:0004842|GO:0030014
Lan12g0858 333 MobiDBLite consensus disorder prediction 1 21 - -
Lan12g0858 333 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 330 - -
Lan12g0858 333 ProSiteProfiles Zinc finger RING-type profile. 258 300 IPR001841 -
Lan12g0858 333 MobiDBLite consensus disorder prediction 102 138 - -
Lan12g0858 333 Pfam RING/Ubox like zinc-binding domain 258 304 - -
Lan12g0858 333 SUPERFAMILY RING/U-box 256 308 - -
Lan12g0858 333 MobiDBLite consensus disorder prediction 22 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0858 Lan-Chr12 15650619 15652352 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0858 - - gmx:100792365 391.734
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0858 12 15650619 15652352 Lan1g1392 1 23654755 23656357 LSH
Lan12g0858 12 15650619 15652352 Lan1g1982 1 35000263 35001924 LSH