Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1392 ATGGATTCTGATTCAATCACCACCACTACTCCCATTTCTTCTGAAACAGGAGCTAAAAGTCCTTGTAAGAAGAAAAAGCTCAGCAGGTCCGCCAAATTAAAGCAGAATAAGATTGATGCGCGTCGTGAGCAGTGGTTATCTCAAGGTACGATGAAGAATAAGGGGTGCAAGGATGGAGTGGATGGTGATAGCCATGCGCCACCACTGCCGGCCGGGAAACACGGCAAACATTTATTGAAGCAATTGGAGACAGGGCGGGATAGAGATGGATCGATGATTTGTCAAGACAGCGATTTGGAATCACTATCCAACAGCCCCAATAGTGATGTTTCTGGGACGAATTTCACCGGAAGTAGTAGCAGTGGTAGCAGCAGAAGCAGTAGTTCTAGCAGTGCAGGGTGCTGCTCTGGGAATATCACAGAAGACGAGGACGAAGATGAATGCTTGGATGATTGGGAGGCTGTGGCAGATGCTTTAGTGGCCGATGAAAATCATCAGCATCAAAACCCTTGTTATGATTCACCCCCTCAACCTATTGTGCAAACGGTATTGCCTGATGGATTGAATTTAGGAGCTACAAAACTGGATTGTGCTGGATTGGTTCCTTTAGCATCTGGCAATAACCGAGCTTGGAGGGCTGATGATGCTTTTCGCCCTCAGACTTTGCCTAATTTGTCAAAACAGCTCAGTATGCCAAACCCGGATCTATATTGTGGAGGAGGGTCTCCCTGGTCTCGCCCTACAATGCCATCTTCATGTCCAATATGTTGTGAGGATCTTGATTTGACAGACTCAAGTTTTTTGCCTTGCCTGTGTGGGTTTCGGCTTTGTCTCTTTTGCCACAAGCGGATTCTTGAGGAGGATGGTCGCTGTCCTGGGTGTAGGAAGCCCTATGAGTGTGAACCTGCTGAGATGGAGACAGAAGTGGTTGGGGGCAGCCTCACTCTTCGCTTGATCGAGAGGTCTTGA 969 0.4788 MDSDSITTTTPISSETGAKSPCKKKKLSRSAKLKQNKIDARREQWLSQGTMKNKGCKDGVDGDSHAPPLPAGKHGKHLLKQLETGRDRDGSMICQDSDLESLSNSPNSDVSGTNFTGSSSSGSSRSSSSSSAGCCSGNITEDEDEDECLDDWEAVADALVADENHQHQNPCYDSPPQPIVQTVLPDGLNLGATKLDCAGLVPLASGNNRAWRADDAFRPQTLPNLSKQLSMPNPDLYCGGGSPWSRPTMPSSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEPAEMETEVVGGSLTLRLIERS* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1392 322 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 18 319 - -
Lan1g1392 322 SUPERFAMILY RING/U-box 251 303 - -
Lan1g1392 322 MobiDBLite consensus disorder prediction 1 137 - -
Lan1g1392 322 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 310 IPR013083 -
Lan1g1392 322 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 18 319 IPR039780 GO:0004842|GO:0030014
Lan1g1392 322 MobiDBLite consensus disorder prediction 96 137 - -
Lan1g1392 322 MobiDBLite consensus disorder prediction 76 94 - -
Lan1g1392 322 MobiDBLite consensus disorder prediction 1 17 - -
Lan1g1392 322 CDD mRING-HC-C4C4_CNOT4 253 296 IPR039515 -
Lan1g1392 322 Pfam RING/Ubox like zinc-binding domain 253 299 - -
Lan1g1392 322 ProSiteProfiles Zinc finger RING-type profile. 253 295 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1392 Lan-Chr1 23654755 23656357 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1392 - - gmx:100792365 372.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1392 1 23654755 23656357 Lan1g1392 1 23654755 23656357 ECH
Lan12g0858 12 15650619 15652352 Lan1g1392 1 23654755 23656357 LSH
Lan1g1392 1 23654755 23656357 Lan1g1982 1 35000263 35001924 LSH