Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1524 ATGGCACAAGAGGCTCCAATTCCAATCACAACTTCAATAACACCCAAAGAGGAACAAGTAGTCATAACTCATGTTGTTTCTTCTGACAAAACAGAAACACCTACTGTTGTTGTTGTTGCTGAGAAAGAGAAAGAGAAAGAGAAAGATTCTGAAGAGGTTGAGAAGCCTTTGAAGCCTCTTGTTGAGGAAACTATTATTTTGGAGACTCATTGCTCTGAACCCAAAAACAATGATGAGCAAGTACCTGAACCTGGTTTGTTAAAGGAAGAAAGTACAAAACTTTCTGATCTTCATGAGAATCAGAACAAGGCACTTCTAGAATTTAAGCAACTTATTCAGGAAGCACTTAACAATCACCACTTTTCTTCCCCACCCACCAAGGAACAACATTATGAGAAGAAAGAGAAACAAGCTGAACCTGAACCTGCACGAGAAACAACAACAACAACTGAAGAAGTTGCAACAAAAACAGAAGAAAAAGGAGAAGAGAAGGAACAAGTGAAAGAAACTGAGGCAGTGATTGAAGACAAAGAAGCTGTAACTGTAGCTGCTATTTCGTCTATAGATGAAGATGGTACAAAAACTGTGGAGGCTATTGAAGAAACCATTATTTCTTCTGTGCAACCAGAACAACCACCACCACCACCTGAAGAGAAAGTTTCTGACACTGAAACAAAGGAAACAAACAAGGTTGATGAAGCTTCTTCTACACCATTGGCACCAGAACAAGTATCTATCTTTGGTGTACCACTCCTTGCAGATGAAAGAAGCGATGTGATTCTCTTGAAGTTTCTTCGTGCAAGAGATTTCAAGGTGAAGGAAGCTTTCACCATGATCTCCAACACAATTCAGTGGAGAAAAGAGTTTAAGATAGATGAATTGGTGGAAGAGAATTTGGATGATGAATTGGAAAAAGTAGTGTACATGCATGGATTTGATAAGGAAGGTCACCCTGTGTGTTACAACATATATGGAGAGTTCAATAGCAAGGAGCTTTATAAGAAAACTTTTTCTGATGAAGAGAAGAGGGACACGTTTCTGAGATGGAGGATTCAGTTTCTTGAGAAGAGTATAAGGAAACTTGATTTCAACCATGGTGGCATATGCACTATTGTTCAGGTTAATGATCTAAAGAATTCTCCTGGACCTGGTAAATGGGAACTTAGACAAGCTACCAAACAAGCCCTTCAATTGCTTCAGGATAATTATCCTGAATTTGTAGCCAAACAGGTATTCATCAATGTGCCATGGTGGTATCTAGCAGTGAATAGAATGATAAGTCCTTTTCTCACTCAGAGAACCAAAAGCAAGTTTGTATTTGCAGGTCCTTCAAAATCAGTTGAGACCCTTTTGAGCTACATAGCTCCAGAGCAACTTCCTGTGAAGTATGGTGGACTAAGCAAAGATGGGGAATTTGGAAATACCGATGTTGTTACAGAAGTCACTGTTAAACCAGCAACAAAACATACAGTAGAATTTCCTGTTACCGAGCAATGCTTACTCTCTTGGGAGATAAGAGTAATAGGGTGGGATGTAAGTTATGGTGCAGAATTTGTGCCAAGCTCAGAAGGAAGCTATACAGTAATAATCCAAAAGGCTAGAAAAGTTGCTTCATCAGAAGAGCCAGTGCTTTTGAACAGTTTCAAAGTTGGTGAGCCTGGGAAAGTTGTTCTCACCATTGATAATTCAAGTTCTAAGAAGAAGAAGATATTATATCGTTTGAAGACCAAGCCTTCTCCCTCTGATTGA 1749 0.3922 MAQEAPIPITTSITPKEEQVVITHVVSSDKTETPTVVVVAEKEKEKEKDSEEVEKPLKPLVEETIILETHCSEPKNNDEQVPEPGLLKEESTKLSDLHENQNKALLEFKQLIQEALNNHHFSSPPTKEQHYEKKEKQAEPEPARETTTTTEEVATKTEEKGEEKEQVKETEAVIEDKEAVTVAAISSIDEDGTKTVEAIEETIISSVQPEQPPPPPEEKVSDTETKETNKVDEASSTPLAPEQVSIFGVPLLADERSDVILLKFLRARDFKVKEAFTMISNTIQWRKEFKIDELVEENLDDELEKVVYMHGFDKEGHPVCYNIYGEFNSKELYKKTFSDEEKRDTFLRWRIQFLEKSIRKLDFNHGGICTIVQVNDLKNSPGPGKWELRQATKQALQLLQDNYPEFVAKQVFINVPWWYLAVNRMISPFLTQRTKSKFVFAGPSKSVETLLSYIAPEQLPVKYGGLSKDGEFGNTDVVTEVTVKPATKHTVEFPVTEQCLLSWEIRVIGWDVSYGAEFVPSSEGSYTVIIQKARKVASSEEPVLLNSFKVGEPGKVVLTIDNSSSKKKKILYRLKTKPSPSD* 583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1524 582 MobiDBLite consensus disorder prediction 125 171 - -
Lan1g1524 582 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 296 471 IPR001251 -
Lan1g1524 582 Gene3D - 224 288 - -
Lan1g1524 582 Coils Coil 98 118 - -
Lan1g1524 582 PANTHER PATELLIN-3 PROTEIN 1 582 - -
Lan1g1524 582 SUPERFAMILY Supernatant protein factor (SPF), C-terminal domain 478 576 IPR036598 -
Lan1g1524 582 ProSiteProfiles GOLD domain profile. 474 576 IPR009038 -
Lan1g1524 582 SMART sec14_4 301 468 IPR001251 -
Lan1g1524 582 CDD SEC14 302 466 IPR001251 -
Lan1g1524 582 Pfam CRAL/TRIO domain 305 465 IPR001251 -
Lan1g1524 582 SUPERFAMILY CRAL/TRIO domain 306 468 IPR036865 -
Lan1g1524 582 SMART CRAL_TRIO_N_2 257 282 IPR011074 -
Lan1g1524 582 Gene3D GOLD domain 480 576 - -
Lan1g1524 582 PANTHER PATELLIN-1 1 582 IPR044834 GO:0008289
Lan1g1524 582 MobiDBLite consensus disorder prediction 217 231 - -
Lan1g1524 582 Pfam CRAL/TRIO, N-terminal domain 255 281 IPR011074 -
Lan1g1524 582 MobiDBLite consensus disorder prediction 116 171 - -
Lan1g1524 582 Gene3D - 291 479 IPR036865 -
Lan1g1524 582 SUPERFAMILY CRAL/TRIO N-terminal domain 86 298 IPR036273 -
Lan1g1524 582 MobiDBLite consensus disorder prediction 204 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1524 Lan-Chr1 25707569 25710766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1524 261 460 Acyl Lipid Metabolism Gene Families AT1G55840 27.315 1.84e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1524 - - gmx:100788197 722.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g1524 1 25707569 25710766 Lan15g0480 15 11264529 11269057 PCT
Lan1g1524 1 25707569 25710766 Lan14g0412 14 9135333 9139710 PCT
Lan15g0480 15 11264529 11269057 Lan1g1524 1 25707569 25710766 PCT
Lan14g0412 14 9135333 9139710 Lan1g1524 1 25707569 25710766 PCT