Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g1349 ATGAGTTCCATATCTATCTCCTTTTCTTGTTCCATCATTCCCTCTCCAATTCCCCTTCACAACAACAATTACCCTTTCCCCACAACAACCCAAGCTCCAATCTTTAGGGTTACCCTCTTCGCCATTTCATCTCCCCCTTCCAAATCTCCTTCTTCTTCATCACAAGATGTCAAAAAGAAACATTGGAAACGAGGTGAATTTCCTGGTACTTCTCAAACACAGAGTACGAGGAGGACCCCAATCAAGAACATTAAGAAGAGGTTGGATAAAAAGAACATCGCTAAGGCATGGGTCAACACTGTTGCTGAAGCTTTGTCTGAACGTGTTGAAAAGAAGCAGTGGCTTCAAGCACTTGAGATATTTGATATGCTTAGAGAGCAATCCTGGTACCAGCCCAAAGAAGGGACCTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCGTCAGCTTTTTACCATAATGATTGAAGATGGTTTGGCGCCTACTCCTGAACTATACACAGCCTTACTCGCTGCATATTGCAGGAGCAATCTGATTGACGAGGCATTTTCAATTCTTAATGAGATGAAGAGCCATCCTTTTTGCCAGCCAGATATTTTCACTTACAGCACCTTAATAAAACCTTGTGTGGATGCTTTTAAATTTGACTTGGTTGAGTTGTTGTATGTAGAAATGGCGGAAAGATCTATCACACCTAACACTGTCACTCAGAACATTGTTTTGAATGGTTATGGCAAGGCAGGGAAGTTTGATGAGATGGAGAAAGTACTGTCTGGTATGCTGGAGAGCACTACGTGCAAGCCCGATGTTTGGACAATGAACACATTCATCAGTGTCTTTGGTAATATTGGTCAGATTGATATGATGGAGAAATGGTACAAAAAATTCTGTAACTTCGGGATAGAGCCAGAAACACGTACTTTTAATGTTCTGATTAGTGCCTATGTAAAGAAACGAATGTATCATAAAATGTCATCTGTTATGGAGTATATGCGTAAGTTGCAACTTCCATGGACAACCTCTACTTACAACAACATGATTGAGGCATTTGCAGATGTAGGTGATGCTAAACACATGGAGTATACGTTCGATCAAATGCGTACCGAGGGTATGAAAGCAGATACCAGGACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCAGGTCTCTTCCATAAAGTAATTAGCAGCATTCGCTTGGCTGCCAAGTTAGAGATAGCTGAGAATATCACCTTTTATAATGCAGTATTATCTGCATGCGCAAAAGCAGATGATTTGATGGAAATGGAGAGAGTTTTCAATCGAATGAAAGATAACCAATGTCAGCCAGATGACACAACATTCTCGATCATGATCGAGGCATATAGAAAAGAGGGTATGAACGACAAGATATACTATTTGGAGCAGGAAAAACAGACAATGCTTACTGATGATAAAATAGTGAGTGAGCCTGAGGATAAAATAGTTCAGTCTTAA 1494 0.407 MSSISISFSCSIIPSPIPLHNNNYPFPTTTQAPIFRVTLFAISSPPSKSPSSSSQDVKKKHWKRGEFPGTSQTQSTRRTPIKNIKKRLDKKNIAKAWVNTVAEALSERVEKKQWLQALEIFDMLREQSWYQPKEGTYMKLIVLLGKSGQPHRARQLFTIMIEDGLAPTPELYTALLAAYCRSNLIDEAFSILNEMKSHPFCQPDIFTYSTLIKPCVDAFKFDLVELLYVEMAERSITPNTVTQNIVLNGYGKAGKFDEMEKVLSGMLESTTCKPDVWTMNTFISVFGNIGQIDMMEKWYKKFCNFGIEPETRTFNVLISAYVKKRMYHKMSSVMEYMRKLQLPWTTSTYNNMIEAFADVGDAKHMEYTFDQMRTEGMKADTRTFCCLINGYANAGLFHKVISSIRLAAKLEIAENITFYNAVLSACAKADDLMEMERVFNRMKDNQCQPDDTTFSIMIEAYRKEGMNDKIYYLEQEKQTMLTDDKIVSEPEDKIVQS* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g1349 497 PANTHER ATPASE EXPRESSION PROTEIN 3 1 485 - -
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 345 379 IPR002885 -
Lan1g1349 497 Pfam PPR repeat 383 401 IPR002885 -
Lan1g1349 497 Pfam PPR repeat 136 165 IPR002885 -
Lan1g1349 497 TIGRFAM PPR: pentatricopeptide repeat domain 241 276 IPR002885 -
Lan1g1349 497 TIGRFAM PPR: pentatricopeptide repeat domain 348 380 IPR002885 -
Lan1g1349 497 TIGRFAM PPR: pentatricopeptide repeat domain 171 204 IPR002885 -
Lan1g1349 497 TIGRFAM PPR: pentatricopeptide repeat domain 313 339 IPR002885 -
Lan1g1349 497 TIGRFAM PPR: pentatricopeptide repeat domain 419 450 IPR002885 -
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 204 238 IPR002885 -
Lan1g1349 497 Gene3D Tetratricopeptide repeat domain 70 233 IPR011990 GO:0005515
Lan1g1349 497 Gene3D Tetratricopeptide repeat domain 408 480 IPR011990 GO:0005515
Lan1g1349 497 Gene3D Tetratricopeptide repeat domain 234 305 IPR011990 GO:0005515
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 239 274 IPR002885 -
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 275 309 IPR002885 -
Lan1g1349 497 Gene3D Tetratricopeptide repeat domain 328 407 IPR011990 GO:0005515
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Lan1g1349 497 Pfam PPR repeat family 172 215 IPR002885 -
Lan1g1349 497 Pfam PPR repeat family 238 284 IPR002885 -
Lan1g1349 497 Pfam PPR repeat family 415 461 IPR002885 -
Lan1g1349 497 Pfam PPR repeat family 309 357 IPR002885 -
Lan1g1349 497 MobiDBLite consensus disorder prediction 44 84 - -
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Lan1g1349 497 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 415 449 IPR002885 -
Lan1g1349 497 PANTHER OS03G0309800 PROTEIN 1 485 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g1349 Lan-Chr1 23180355 23182712 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan1g1349 132 470 Glycosyltransferase AT1G05670 23.599 4.05e-27 113
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g1349 - - gmx:100786610 758.444
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0924 12 16154250 16157009 Lan1g1349 1 23180355 23182712 LSH
Lan1g1349 1 23180355 23182712 Lan14g0073 14 1031893 1034663 PCT
Lan14g0073 14 1031893 1034663 Lan1g1349 1 23180355 23182712 PCT