Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan12g0924 | ATGGCTTCCATGTCTCTCTCTTTTTATTCTTCCATCATCCTCTCTCCTATCTCCAAACACAAATGCTTCAAATTTCCCAACCCCAGAACCCAAGTTTCAATCTTTAGGGTTACCCGTTCCGCAATTTCATATCCTCCTTCAAAATCCACTTCTCCTTCGTCGCCCTCAGTTGTAAAAAAGAAACACTGGAAGCAAGGTGAATTTCCTGGTACTTCGGAAAAACCGAGTACGAGGAGGACTCCCATCAAGAACATCAAGAAGAGGTTGGACAAAAAGGACATTGCTAAGGCCTGGGTCAACACTGTCACTGAAGCCTTATCTGAACGTGTTGATAAGAAGCAATGGCTTCAAGCCCTTGAGATATTTGACATGCTTAGAGAACAATCGTGGTACCAACCCAAAGAAGGGACCTACATGAAACTCATTGTGTTGCTTGGAAAATCTGGTCAACCCCACCGTGCCCATCAGCTTTTTATGACAATGATTGAAGATGGTTTGGAGCCTACTCCTGAACTATACACAGCCTTACTCGCTGCATATTGCAGAAGCAATCTGATTGATGAGGCATTTTCAATTCTTGATGAGATGAAGAGCCTTCCTTTTTGCCAGCCAGATATTTTCACTTACAGTACCTTAATAAAATCTTGTGTGGATGCTTTTAAATTTGACTTGGTTGGGTCGTTGTATGAAGAAATGGCCGGAAGATCTATCACACCTAACACTGTCACTCAGAACATTGTTTTGAATGGTTATGGAAAAGCGGGGAAGTTTGATGAGATGGAGAAAGTGCTGTCCGGTATGCTGGAGAGCACTGCATGCAAGCCTGATGTTTGGACAATGAACACAATCATCAGTGTTTTTGGTAATATGGGTCAGATTGATATGATGGAGAAATGGTATGAAAAATTCCGTAATTTCGGGATAGAGCCAGAAACACGTACTTTTAATGTTCTGATTGGTGCTTATGGGAAGAAAAGAATGTACGACAAAATGTCATCTGTTATGGAGTATATGCGTAAGTTGCAATTTCCATGGACAACCTCTACTTACAACAATGTGATTGAGGCATTTGCAGATGTAGGTGATGCTAAACACTTGGAATATACGTTTGATCAAATGCGTACCGAGGGTATGAAAGCAGACACCAAGACTTTCTGCTGCCTTATCAATGGTTATGCAAATGCAGGTCTCTTCCATAAAGTAATTAGCAGCGTTCGCTTGGCTGCCAAGTTAGAGATACCCGAGAATATCACCTTTTATAATGCAGTATTATCTGCATGTGCAAAAGCAGAGGATTTGATGGAAATGGAGAGAGTTTTCAATCGTATGAAGGATAACCAATGTCAACCAGATGACACAACATACTCGATCATGATCGAGGCATATAGAAAAGAGGGTATGAATGACAAGATATACTACTTGGAGCAGGAAAAGCAGACGATGCTTACTGATGATAAAATAGTGAGTGAACCTGAGGATGAAATCCTTGCTTGA | 1494 | 0.4116 | MASMSLSFYSSIILSPISKHKCFKFPNPRTQVSIFRVTRSAISYPPSKSTSPSSPSVVKKKHWKQGEFPGTSEKPSTRRTPIKNIKKRLDKKDIAKAWVNTVTEALSERVDKKQWLQALEIFDMLREQSWYQPKEGTYMKLIVLLGKSGQPHRAHQLFMTMIEDGLEPTPELYTALLAAYCRSNLIDEAFSILDEMKSLPFCQPDIFTYSTLIKSCVDAFKFDLVGSLYEEMAGRSITPNTVTQNIVLNGYGKAGKFDEMEKVLSGMLESTACKPDVWTMNTIISVFGNMGQIDMMEKWYEKFRNFGIEPETRTFNVLIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKHLEYTFDQMRTEGMKADTKTFCCLINGYANAGLFHKVISSVRLAAKLEIPENITFYNAVLSACAKAEDLMEMERVFNRMKDNQCQPDDTTYSIMIEAYRKEGMNDKIYYLEQEKQTMLTDDKIVSEPEDEILA* | 498 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan12g0924 | 497 | Gene3D | Tetratricopeptide repeat domain | 339 | 490 | IPR011990 | GO:0005515 | |
| Lan12g0924 | 497 | Gene3D | Tetratricopeptide repeat domain | 97 | 269 | IPR011990 | GO:0005515 | |
| Lan12g0924 | 497 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 1 | 486 | - | - | |
| Lan12g0924 | 497 | Gene3D | Tetratricopeptide repeat domain | 270 | 338 | IPR011990 | GO:0005515 | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 172 | 205 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 314 | 342 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 420 | 451 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 349 | 381 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 207 | 241 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 279 | 310 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 242 | 277 | IPR002885 | - | |
| Lan12g0924 | 497 | TIGRFAM | PPR: pentatricopeptide repeat domain | 137 | 169 | IPR002885 | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 276 | 310 | IPR002885 | - | |
| Lan12g0924 | 497 | PANTHER | OS03G0309800 PROTEIN | 1 | 486 | - | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 240 | 275 | IPR002885 | - | |
| Lan12g0924 | 497 | MobiDBLite | consensus disorder prediction | 44 | 80 | - | - | |
| Lan12g0924 | 497 | Pfam | PPR repeat family | 173 | 217 | IPR002885 | - | |
| Lan12g0924 | 497 | Pfam | PPR repeat family | 347 | 394 | IPR002885 | - | |
| Lan12g0924 | 497 | Pfam | PPR repeat family | 275 | 322 | IPR002885 | - | |
| Lan12g0924 | 497 | Pfam | PPR repeat family | 416 | 462 | IPR002885 | - | |
| Lan12g0924 | 497 | MobiDBLite | consensus disorder prediction | 44 | 58 | - | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 134 | 168 | IPR002885 | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 169 | 203 | IPR002885 | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 416 | 450 | IPR002885 | - | |
| Lan12g0924 | 497 | Pfam | PPR repeat | 245 | 270 | IPR002885 | - | |
| Lan12g0924 | 497 | Pfam | PPR repeat | 137 | 166 | IPR002885 | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 346 | 380 | IPR002885 | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 205 | 239 | IPR002885 | - | |
| Lan12g0924 | 497 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 311 | 345 | IPR002885 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan12g0924 | Lan-Chr12 | 16154250 | 16157009 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan12g0924 | 132 | 477 | Glycosyltransferase | AT1G05670 | 23.121 | 4.71e-28 | 116 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan12g0924 | - | - | aip:107635404 | 794.653 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Lan12g0924 | 12 | 16154250 | 16157009 | Lan1g1349 | 1 | 23180355 | 23182712 | LSH | |
| Lan12g0924 | 12 | 16154250 | 16157009 | Lan14g0073 | 14 | 1031893 | 1034663 | PCT | |
| Lan14g0073 | 14 | 1031893 | 1034663 | Lan12g0924 | 12 | 16154250 | 16157009 | PCT |