Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan14g0073 ATGGCTTCAACATCACTCTCATTTTCTTCTTCTTCTTCTTCTTCTTCTCGTTCTTCCATTTTCTCCTATATAAAATCCAACCCAATAACCCAAGATCCAAACTTTCGTGTTACCCACTTCTCAACTTCATCTCCACCATCAAAAACTGCTTCTACTTCTTCCAATGAGAGTGAATTTCTTAGTATCTCACCAACAACGTTTTCTTTGAATATGAGGAAGATAAACGATAGAAAGAGTAAGAAGAAGAAGAAGAAGAACAACAACAACAACAACAATGCTAAGGTTGGGGCCCACACTCTTCCTGAAGTCTTCTCCTATTGCATCCACAAGAAGCATTGGCTTAAAGCCCTTGAGTTATTTGACATTCTTAGAGAGCAACCCTATTACGAACCCAAAGAGAAGACTTACATGAAACTCATTGTGTTGCTTGGGAAATCTGGTGAACCTCATCATGCTCATCAGCTTTTTAATACTATAAAAGAAGATGGTTGTGATAGTACTCAACTTTACACAGCCTTACTTGCAGCGTATTGTCGGAATAGTTTGATCGATGAGGCATTTTCGACTCTTGATGAGATGAAGCACCTCCCTCGCTGCCAACCTGATGTTGTCACTTACAGTACCTTGATAAAAGCTTGTGTGGATGCTTTGGAAATTGAAAGGGTTGAATTGCTATATGAGGAAATGGCTGAAAGATCCGTGGTGCCGGAAACTGCCACTCATAACATTGTTCTGAGTGGTTATGGTAAGGCTGGGTGGTTTGACAAGATGGAGAAAATACTGTCAAGTATGATGGAGAGCACTAAATGCAAGCCTGATATTTGGACAATGCACACAGTCATCAGTGCCTTTGGTAATAAGGGTCGAATTGATCTAATGGAGAAATGGTACGAGAATTTCTGTGATTTCGGGATACATCCAGAAACCCGAACTTTTAATATTTTGATTGGAGCGTATGGGAAGAAAGGAATGTATGACAAAATGTCATCTGTTATGCAGTCTATGCGCAAGTTACAATGCCCGTGGACTACCTCAACGTATAACAATTTGATCGAGGCATTCGCAGTCGTAGGTGATGCTAAAAGCATGGAGTATACATTTGATCAGATGTGTGCTGATGGTATGAAAGTAGATACTAAGACTTTTTGCTGCCTAATTAATGGTTATGCTAATGCCGGTACCTTCCATAAAGTAAATAGCATTGTTCAATTGGCTGGGAGGTTTCAGATACCCGAGAATACCTCGTTTTATAACTCGGTCATATCTGCATGTGCAAAGGCAGAGGATTTGATGGAAGTGGAAAGAATTTTCAAGCGTATGAAAGAAAAACGATGTCAACCGGATGAAACAACATACTCCATCTTGGTTGAGGCATACCAAAAGGAAGGTATGGATGATAAGATATACTATTTGGAACAGGAAAATCGGATTACGATAACTGGTGAAAAAAATTTGACTATGCCTGAAACCCATGGTTGA 1479 0.3976 MASTSLSFSSSSSSSSRSSIFSYIKSNPITQDPNFRVTHFSTSSPPSKTASTSSNESEFLSISPTTFSLNMRKINDRKSKKKKKKNNNNNNNAKVGAHTLPEVFSYCIHKKHWLKALELFDILREQPYYEPKEKTYMKLIVLLGKSGEPHHAHQLFNTIKEDGCDSTQLYTALLAAYCRNSLIDEAFSTLDEMKHLPRCQPDVVTYSTLIKACVDALEIERVELLYEEMAERSVVPETATHNIVLSGYGKAGWFDKMEKILSSMMESTKCKPDIWTMHTVISAFGNKGRIDLMEKWYENFCDFGIHPETRTFNILIGAYGKKGMYDKMSSVMQSMRKLQCPWTTSTYNNLIEAFAVVGDAKSMEYTFDQMCADGMKVDTKTFCCLINGYANAGTFHKVNSIVQLAGRFQIPENTSFYNSVISACAKAEDLMEVERIFKRMKEKRCQPDETTYSILVEAYQKEGMDDKIYYLEQENRITITGEKNLTMPETHG* 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan14g0073 492 MobiDBLite consensus disorder prediction 27 57 - -
Lan14g0073 492 PANTHER ATPASE EXPRESSION PROTEIN 3 24 480 - -
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 202 236 IPR002885 -
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 237 272 IPR002885 -
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 196 IPR002885 -
Lan14g0073 492 Pfam PPR repeat family 413 459 IPR002885 -
Lan14g0073 492 Pfam PPR repeat family 307 355 IPR002885 -
Lan14g0073 492 Pfam PPR repeat family 169 214 IPR002885 -
Lan14g0073 492 Gene3D Tetratricopeptide repeat domain 266 334 IPR011990 GO:0005515
Lan14g0073 492 Pfam PPR repeat 135 164 IPR002885 -
Lan14g0073 492 Pfam PPR repeat 240 267 IPR002885 -
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lan14g0073 492 TIGRFAM PPR: pentatricopeptide repeat domain 204 236 IPR002885 -
Lan14g0073 492 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Lan14g0073 492 TIGRFAM PPR: pentatricopeptide repeat domain 311 342 IPR002885 -
Lan14g0073 492 TIGRFAM PPR: pentatricopeptide repeat domain 170 203 IPR002885 -
Lan14g0073 492 TIGRFAM PPR: pentatricopeptide repeat domain 417 449 IPR002885 -
Lan14g0073 492 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Lan14g0073 492 Gene3D Tetratricopeptide repeat domain 98 265 IPR011990 GO:0005515
Lan14g0073 492 MobiDBLite consensus disorder prediction 72 95 - -
Lan14g0073 492 PANTHER OS03G0309800 PROTEIN 24 480 - -
Lan14g0073 492 Gene3D Tetratricopeptide repeat domain 335 486 IPR011990 GO:0005515
Lan14g0073 492 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan14g0073 Lan-Chr14 1031893 1034663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan14g0073 115 474 Glycosyltransferase AT1G05670 22.715 4.17e-25 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan14g0073 - - pmum:103323280 607.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0924 12 16154250 16157009 Lan14g0073 14 1031893 1034663 PCT
Lan1g1349 1 23180355 23182712 Lan14g0073 14 1031893 1034663 PCT
Lan14g0073 14 1031893 1034663 Lan12g0924 12 16154250 16157009 PCT
Lan14g0073 14 1031893 1034663 Lan1g1349 1 23180355 23182712 PCT