LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan1g1286	ATGTCCAATTTTGATGTTGGCAAGAACAGTAGTGAAGGTTCAGATAATCAGAACAAGTTATTAAAAGATGTTCAAACTATAAGCGAAGTTGTATACCTGGACAAAAGTTCTTTGAAGAAGGCAACATCTGCTGTGATTTCTCGATCCAAATCGACCGACAAATTCCCCGTGCCTGATCCAAAATCAAAGCCTAAAGCAAACAAAGAAGATAAATTGGACAAAGATAAGAAATCTATATGGAATTGGAAGCCATTAAAAGCCCTTAACATAAACCGCAGTCAAAAGTTTAATTGTTGTTTTTCTCTCCAAGTGCATTTGATTGAAGGGTTACCGTCGACTTTCAATGATGCCAACCTTTGTGTGTACTGGAAGAGGCGAGATGAGGTTATGATGACACCTCCGGCCAAGGTAATTCAATGCACGGCCGAGTTTGAGGAGAGGTTGACTTACACTTGCTCAATCTCTGGAAGTAAGAGTGGACCGCACGGCTCTGCAAAGTATGAAGCAAAGCATGTTTTGCTCTATGCTTCTATGGTTGGTGCGCCAGAACTTGATTTAGGGAAGCACCGGGTAGATCTCTCGAGGTTGCTTCCTCTCACACTGAAAGAGCTTGAAGAGGAGAAGAGCTCGGGGAAGTGGACTACAAGTTTTAGATTATCAGGAGCAGCTACGGGTGCCGCAATGAATGTCAGTTTTGGGTATGTGGTGGTTAGTGATAACACCAGTGCTACAAGAGACAACCATATTGCTCCCGGCACATTGACTTTGAGGCAAAATAGTCTGGCGTCTTTGATGAAACCGGATCAGTCTGACAGGAGTGTAAGGCGTACTGGAAGTTTGCCAAGCATTATCAATCAGTATTCATGTCAAAATATAGATGTGGTAAAGGATCTTCATGAGGTATTGCCACTATCAAAATCAGAATTAGCCATCTCAATAGACACCTTATATAAAAAAATTGAAGAAAAAAACACCTTTAGTCCTCTGAAAAATGAACCTGAACTTGATGTATTTACAAAAACTCTTGAAATGATCAAACCAGATGCCTGTATTTCATCTGAGACTGGAAAAGAAAAACCAAAAGAGCATCCAGTTAAGGACGGAAAAACATGTAATCCAGTGCATGGCAAACCTGAATTTGTTGTGTTCCAAGAAAACATGGAGACGGTTAAGCCAGATGATTATCCTTCACCTGACTCTGGAAACGAAAATTGTGAAAAGTGTGAAGGTGATGGGTTTTTTGTTGTTGATCAGGGGATAGAATTGTCATCGAATGAACATGTTAAACGAGAGGAACCAGTCACAAAGGCTCTTGCTGATGCTCATACAGTTGACCGTATCTCTACGATTGATGCTGCTGCCATACAAGTATCTTTTGAAGATAGTTATAATAATGATTCCCTGTATGAGGTAGATGATAGTTCAAAAGAAAAGACTGTGGTACATGAATTTTCTTACGAAGAGGGCACCATATGCACAACAGAACTTCTCCTGCAAGAACTAGAATCAGCTTTAAACAGTGTCTCAGATTTGGAGAGTGTGGCACTTGACTCTCCTGATATTATGGAAGCCAAATCTGAATATAAGATGAGAAAGTCCCATAGCTTGGACGATGTTACAGAATCAGTTGCCAGTGAATTCTTAAGTATGCTAGGCATAGACCATAATCCAATGAGCTCGAGTTCTGAAAGTGAGACTGAGTCTCCAAGAGAGCGCCTTTTAAGACAATTTGAGAAGGACACACTCTCTGAGGGCTTCTCTTTATTTAATTTTGAAATGGGCAATGATAATGAAGCAGATGATAACTATGATGATTCTTTTGGATTTGAGCAGTGGGAATTCTCTGACAGTATTAACTCATCATCCATGTTGGAAGATCTGAAGGAAGAGCATTTAATCGAGTCTCGGGATGTGAAGAGCAAAATGAAGCCACATATGTTAGAAGACATGGAAACAGAAGCCTTAATGCGTCAATGGGGTTTCAATGAGAATGCTTTTCAGCATTCTCCACCAAAAGACATTACTGGTTTTGGAAGTCCAATTCATTTACCGCCTGAAGAGTCTCACGTATTACCTCCTCTGGCAGAAGGGTTAGGCCCTTTTCTTCAGACAAAAGATGGGGGGTTTCTACGGTCTATGAATCCCGCACTTTTCAGGAATGGTAAATGTGGGGGGAACTTAATCATGCAGGTTTCCAACCCCGTTGTGGTACCTGCAGAAATGGGTTCTGGAATAATGGAGATTTTGCAGTGTTTGGCTTCAGTGGGAATTGAAAAGCTTTCCATGCAGGCAAAGAAATTAATGCCTCTGGAGGATATCACAGGGAAGAATATGCAACAAATAGCATGGGAATCTATGCCAGTCTCACAGGGTACAGAAAGGCAATGCCATTTGCAGCATGATTTAGTAACAGTGCAAGATGCTACTTGTGTTCAAAGGGACTCAAAAGGAACATCATCTGGACTAAAATCTATCAAGTTTAGTCCAAGTTCAGTTGGCAACCAGACAGGCAAAGAGTTTGTTTCATTGGATGATCTTGCTCCACTGGCTATGGATAAAATTGAAGCACTTTCAGTGGAGGGTTTGAGAATACAATCAGGTATGTCGGAGGAGGATGCACCATCAAACATCATTACACAATCCTTTGGAGAAATTTCAGCAATTCAGGGCAAGGGTGTTACTACTAGTGGGTCCCTTGACCTGGATGGAGCTGCTGCTTTGCAGTTGTTGGATTTAAAATATCACAGTGATGGCGATGATGGCATAATCGGCCTGTCATTAACTCTTGATGAATGGATGAGACTGGATTCTGGTGAAATTGATGACGATATAGATAATATCAGTGAGCACACTTCCAAAGTTCTAGCAGCCCATCACGCTAATAACTCTTTTGAGTTAATTTGTAGCAGCTCAAAGGGAGAAAGGAAACGAGGTAAAGGCACTGCCAGGAAATGTGGTTTGCTCGGAAACAATTTCACAGCAGCATTAATGGTGCAACTTCGCGATCCTATGAGAAATTATGAGCCTGTTGGAACACCAATGCTTGCTCTTATACAAGTTGAGAGGGTGTTTTTCCCACCAAAGCAAAAAATTTCAAGGAGTGTGTCTGAGGTCGGGAACAATGACAATGTGGGCGATGAGTGTGAAATAGTGGCGAAAGTGGAGATGAAGCAAAGCAAGAAAGAGGAGAAAAATTCTGAAGAGGAGGGCATTCCTCAGTTCAGAATTACTGAAGTCCATGTTGCCGGTCTCAAGAACGAACCTTACAAAAAGAAACTGTGGGGCACGTCAAACCAGCAACAATCCGGTTCTCGTTGGTTGCTTGCTAATGGAATGGGAAAGAGCAATAAGCATCCATTAATGAAGTCAAAGGCTGTATCTAAATCTACAAATAGTGCTCCAGTTACAACAAAGGTGCAACCTGGTGACACATTATGGAGCATTTCGTCTCGTATTTATGGTACTGGAACAAAATGGAAGGAATTGGTAGCACTGAATCCACATATAAGAAATCCCAATATCATTATACCTAATGAAACTATAAGAGTAGGTTGA	3555	0.4127	MSNFDVGKNSSEGSDNQNKLLKDVQTISEVVYLDKSSLKKATSAVISRSKSTDKFPVPDPKSKPKANKEDKLDKDKKSIWNWKPLKALNINRSQKFNCCFSLQVHLIEGLPSTFNDANLCVYWKRRDEVMMTPPAKVIQCTAEFEERLTYTCSISGSKSGPHGSAKYEAKHVLLYASMVGAPELDLGKHRVDLSRLLPLTLKELEEEKSSGKWTTSFRLSGAATGAAMNVSFGYVVVSDNTSATRDNHIAPGTLTLRQNSLASLMKPDQSDRSVRRTGSLPSIINQYSCQNIDVVKDLHEVLPLSKSELAISIDTLYKKIEEKNTFSPLKNEPELDVFTKTLEMIKPDACISSETGKEKPKEHPVKDGKTCNPVHGKPEFVVFQENMETVKPDDYPSPDSGNENCEKCEGDGFFVVDQGIELSSNEHVKREEPVTKALADAHTVDRISTIDAAAIQVSFEDSYNNDSLYEVDDSSKEKTVVHEFSYEEGTICTTELLLQELESALNSVSDLESVALDSPDIMEAKSEYKMRKSHSLDDVTESVASEFLSMLGIDHNPMSSSSESETESPRERLLRQFEKDTLSEGFSLFNFEMGNDNEADDNYDDSFGFEQWEFSDSINSSSMLEDLKEEHLIESRDVKSKMKPHMLEDMETEALMRQWGFNENAFQHSPPKDITGFGSPIHLPPEESHVLPPLAEGLGPFLQTKDGGFLRSMNPALFRNGKCGGNLIMQVSNPVVVPAEMGSGIMEILQCLASVGIEKLSMQAKKLMPLEDITGKNMQQIAWESMPVSQGTERQCHLQHDLVTVQDATCVQRDSKGTSSGLKSIKFSPSSVGNQTGKEFVSLDDLAPLAMDKIEALSVEGLRIQSGMSEEDAPSNIITQSFGEISAIQGKGVTTSGSLDLDGAAALQLLDLKYHSDGDDGIIGLSLTLDEWMRLDSGEIDDDIDNISEHTSKVLAAHHANNSFELICSSSKGERKRGKGTARKCGLLGNNFTAALMVQLRDPMRNYEPVGTPMLALIQVERVFFPPKQKISRSVSEVGNNDNVGDECEIVAKVEMKQSKKEEKNSEEEGIPQFRITEVHVAGLKNEPYKKKLWGTSNQQQSGSRWLLANGMGKSNKHPLMKSKAVSKSTNSAPVTTKVQPGDTLWSISSRIYGTGTKWKELVALNPHIRNPNIIIPNETIRVG*	1185

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan1g1286	1184	MobiDBLite	consensus disorder prediction	1122	1138	-	-
	Lan1g1286	1184	ProSiteProfiles	LysM domain profile.	1135	1183	IPR018392	-
	Lan1g1286	1184	SMART	LysM_2	1136	1184	IPR018392	-
	Lan1g1286	1184	SUPERFAMILY	LysM domain	1135	1183	IPR036779	-
	Lan1g1286	1184	MobiDBLite	consensus disorder prediction	37	73	-	-
	Lan1g1286	1184	MobiDBLite	consensus disorder prediction	1110	1138	-	-
	Lan1g1286	1184	Pfam	LysM domain	1138	1183	IPR018392	-
	Lan1g1286	1184	Gene3D	LysM domain	1124	1184	IPR036779	-
	Lan1g1286	1184	CDD	LysM	1138	1183	IPR018392	-
	Lan1g1286	1184	MobiDBLite	consensus disorder prediction	352	371	-	-
	Lan1g1286	1184	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	5	1183	IPR039614	-
	Lan1g1286	1184	Pfam	N-terminal C2 in EEIG1 and EHBP1 proteins	93	234	IPR019448	-
	Lan1g1286	1184	ProSiteProfiles	C2 NT-type domain profile.	88	236	IPR019448	-
	Lan1g1286	1184	MobiDBLite	consensus disorder prediction	54	73	-	-
	Lan1g1286	1184	PANTHER	PROTEIN PLASTID MOVEMENT IMPAIRED 1-RELATED 1	5	1183	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan1g1286	Lan-Chr1	22623872	22628552	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan1g1286	-		-	mtr:MTR_2g040970	1453.34

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan12g0987	12	16600720	16605373	Lan1g1286	1	22623872	22628552	LSH
	Lan1g1286	1	22623872	22628552	Lan15g0163	15	1801238	1805813	PCT
	Lan1g1286	1	22623872	22628552	Lan14g0125	14	1546888	1551621	PCT
	Lan15g0163	15	1801238	1805813	Lan1g1286	1	22623872	22628552	PCT
	Lan14g0125	14	1546888	1551621	Lan1g1286	1	22623872	22628552	PCT