Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan1g0397 ATGCGATCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCTGAGGCTGCTTCAGTCTTGAAGCACTCTCTAGGGTTGGCTCGTAGAAGAGGCCATGCACAAGTTACACCTTTGCATGTGGCTGCAACATTGTTAAGCCTTAGAGCTAGTTCTTTCAGAAGGGGTTGTATCAAATCTCAACCTCATCAAACTTCACACCCTCTTCAATGTAGAGCCCTTGAGCTTTGTTTCAATGTTGCACTCAACAGGCTTCCAACTACACCAGCTCCTTTGATCCACACTTCTCATCAGCCTTCTCTTTCCAATGCTCTCATTGCTGCACTCAAAAGAGCACAGGCTCATCAGAGAAGAGGTTCCATTGAGCAACAGCAACAGCAGCCACTTCTTACTGTTAGGGTTGAGCTTGACCAACTCATTATATCCATTCTTGATGACCCTAGTGTTAGTAGGGTTATGAGAGAAGCTGGGTTCTCTAGCACTGCTGTTAAGAACAATATTGAGGACTCTTCTTCATCACCTTCTTCTGTTTTTCAGTGTTATAACACTTCTGGTGGTGTGTTTTCTTCTCCTTGTTCACCTTCTGCTACTGAGACCAACCCTTTCAGTTTCAGGCAGAATCATTTCTTGTCTGCTTACACTTCTGAGTTCAACAACCCGGTTCTCTTTTCTCCACCAAAGAAAGCACCAGTGTATCCTTATCCAGTGACTAGTGCAGCAGCATCTTCTACTAAAGATGATATTAAGGTTGTTTTTGATATCCTGTTGAAGAAGAAAAGGAACACTGTGATAGTTGGTGACTCAGTGTTATTGACTGAAGGCCTTGTGGGAGAGGTCATGAGAAGGTTTGAGAGATCAGAGGTGCCTGATGGGTTAAACTTAACAAATTTTATCAAGTTTCAGTTTGCACCAGTTTCTTTGAGGTATATGAAAAGAAATGAAGTTGAAATGAAGATTTTGGAGCTGAAAAGAAAGGTAGATTCAGTTGCATCAAGAGGAGGTGGTGGTGCAATTTTCTATATTGGAGACTTGAAATGGATAGTGGAGGGATCTTTCAGTAAAAAAGATCAAGAAGGGTCTTTGGATGGTGAAGTTTCTGGTTATAACCCAATTGATCATTTGGTTTCAGAAATTGGAAAGTTATTCAGTGGAACCTCGAACACTAATATGTGGCTAATGGCTACTGCAAGTTACCAAACATACATGAGATGCCAAATGAAGCAACCCCCTCTTGAGTCTCTGTGGTCTCTTCAGGCTGTTCCTGTTCCATCTGGTGGACTTGCTTTGAGTCTCCATGCTTCTAGTGTCCTTGATTCAAAGATGAACATATCCAAGAACCCATCTCATGTGCTTGAAACAAAACTCTTCAGTAACAAGGAGCAGCAAGATAACTGTTGTGAAGAATGTACCTCCAATTATGAAAAAGAAGTTCAATTTATCAAAACAGACCAGAAGAAAATGCTGCCTTTCTGGCTTCAGTCTCATAACATTGAAGCGAATCAGAAGGATGAATTAACCAAGCTGAAAACAAAATGGAATAGATTGTGCCACTGTCTCCACCAAAACCAACAGCATCAGAACAAATCCAACAGCAATTACAATTGGAATGGAAAGATCTATCCTTATAACTCATCAAGTTCTATATCCTTTGCCAACAATACTTATAGCTCCAATATTGTACCGTGCTTCCAGCGTCAACAATCATGCATTGAGTTCAATTTCAGTGACAAAAACCAAGCAACAGAGCCACTCTTGGATTCTCTTGAAGTCACTGCAGAAGGTAAAGAAGTAAAGACTACTCTTGCTCTTGGAAACGGTGGTTCAGGTGAGACGGTGGGGGATATAACTGATAGAACACTCCAACGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGGCATGGCATTCTGAGACTATTCCTTCAGTAGCCGAGGCCTTGGTTGAATCGAAATCAGCAAAGCAAAATAACATTACTTGGTTATTGATGCAAGGCAATGACTCTATTGGAAAAAGAAGAATAGCACTTGCAGTTGCAGAATCAGTTTTCGGCACAGCTGATAAGCTCCTTCACTTGGACATGCTGAAGATAGAGACTTCAATAGCTCCATTTGCTGAAATTCTGACTGGAGCATTGAAAACTCATCAACAGCTTGTGGTGTTAATAGAAAATCTTAATTTTGCTGATGCCCAATTCTTGAAACTACTTGCTTATGGATTTGAAACAGGAAAGATTGGAAATTTAACTACGAATTCTGAAAAGTTAGGCCAAGTGATATTCATATTATCAAATGGTGATTCCACAAGCAATGAAGAGAAGAATCAGGACTCTGTGATCAAGTTGATGCTGCAGGTAAGTGAAGCCAAGCCTAACTTAGAGGCGCCATGTTTAGGCCATAAGCGAAGAGCTGAACTGGACTTGTTCTCGAAGATCAAGACTCCTCGAATTGAACAAAAGGAAGAGGCATTGTTGGTTCCTGAACAAGGGAGCAGAAAGGACTTTTCAAGACAGTCAAGCTTTAACACCCTTGATCTTAATTTGAAGGCAGATGAAGAGGATGATAAAACAGGCGAAAACAGCCCAATTTCAAGTGATTTAACTAGAGAAACTATAGCTGATTCATTAAACTCAAACTGGTTTCTTGACTCAATGGAGAACCGGTTCGAGTTTAACACAAGTCCAGCTATAAACAAGGACATATCAGAGCTGTTCATATCTAAGATCAAAGGGTCCTTTAATGAAATTTGTAACAAGCAATGTTTGGTGAACTTTAGTGTAGATGAGAGGGTGATTAAGGAATTGTATGTAGGGTGTGGTTCTTTTACTAACAGCTTGTTTGAGAACTGGCTCAGAGACATTTTTCAAAACAGCTTGCAGACAGTTAACTTTGGAGGGAAAGAGGGTATACTTGTTAGGCTTACATGGGGTGGTAAAGGAGATAGAAAATTGGATAATGGGTTCATGAGTTCAACTCTGCCCAAAACTATCCAAGTTAACTACTTAATGGGGTGA 3009 0.4068 MRSGGCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSFRRGCIKSQPHQTSHPLQCRALELCFNVALNRLPTTPAPLIHTSHQPSLSNALIAALKRAQAHQRRGSIEQQQQQPLLTVRVELDQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSSSPSSVFQCYNTSGGVFSSPCSPSATETNPFSFRQNHFLSAYTSEFNNPVLFSPPKKAPVYPYPVTSAAASSTKDDIKVVFDILLKKKRNTVIVGDSVLLTEGLVGEVMRRFERSEVPDGLNLTNFIKFQFAPVSLRYMKRNEVEMKILELKRKVDSVASRGGGGAIFYIGDLKWIVEGSFSKKDQEGSLDGEVSGYNPIDHLVSEIGKLFSGTSNTNMWLMATASYQTYMRCQMKQPPLESLWSLQAVPVPSGGLALSLHASSVLDSKMNISKNPSHVLETKLFSNKEQQDNCCEECTSNYEKEVQFIKTDQKKMLPFWLQSHNIEANQKDELTKLKTKWNRLCHCLHQNQQHQNKSNSNYNWNGKIYPYNSSSSISFANNTYSSNIVPCFQRQQSCIEFNFSDKNQATEPLLDSLEVTAEGKEVKTTLALGNGGSGETVGDITDRTLQRAHICKLLQENVAWHSETIPSVAEALVESKSAKQNNITWLLMQGNDSIGKRRIALAVAESVFGTADKLLHLDMLKIETSIAPFAEILTGALKTHQQLVVLIENLNFADAQFLKLLAYGFETGKIGNLTTNSEKLGQVIFILSNGDSTSNEEKNQDSVIKLMLQVSEAKPNLEAPCLGHKRRAELDLFSKIKTPRIEQKEEALLVPEQGSRKDFSRQSSFNTLDLNLKADEEDDKTGENSPISSDLTRETIADSLNSNWFLDSMENRFEFNTSPAINKDISELFISKIKGSFNEICNKQCLVNFSVDERVIKELYVGCGSFTNSLFENWLRDIFQNSLQTVNFGGKEGILVRLTWGGKGDRKLDNGFMSSTLPKTIQVNYLMG* 1003
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan1g0397 1002 ProSiteProfiles Clp repeat (R) domain profile. 8 172 IPR004176 -
Lan1g0397 1002 SUPERFAMILY Double Clp-N motif 12 167 IPR036628 -
Lan1g0397 1002 Gene3D - 9 172 IPR036628 -
Lan1g0397 1002 MobiDBLite consensus disorder prediction 844 863 - -
Lan1g0397 1002 Gene3D - 607 810 IPR027417 -
Lan1g0397 1002 PANTHER PROTEIN SMAX1-LIKE 5 1 973 - -
Lan1g0397 1002 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 973 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan1g0397 Lan-Chr1 3153998 3158019 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan1g0397 - - gmx:100814376 1315.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan1g0397 1 3153998 3158019 Lan1g0397 1 3153998 3158019 ECH
Lan12g1019 12 16859418 16863589 Lan1g0397 1 3153998 3158019 LSH
Lan1g1253 1 22389298 22393124 Lan1g0397 1 3153998 3158019 LSH
Lan1g0397 1 3153998 3158019 Lan15g0127 15 953601 957873 PCT
Lan15g0127 15 953601 957873 Lan1g0397 1 3153998 3158019 PCT