Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1019 ATGCGATCAGGAGGTTGTGCATTGCAGCAGACCCTCACAGCTGAGGCTGCTTCAGTCTTGAAGCACTCTCTGGGTTTGGCTCGTAGGAGGGGCCATGCACAGGTCACACCTTTGCATGTAGCAGCAACATTGCTAAGCCTAAGAGCAAGTTCCTTCAGAAGGGGTTGTCTCAAATCTCAGCCTCACCAAACTTCACACCCTCTTCAATGCAGAGCCCTTGAGCTTTGTTTCAATGTTGCCCTCAACAGGCTTCCAACAACACCAGCTCCTTTGATCCAGAATTCTCATCAGCCTTCTTTTTCCAATGCTCTCATTGCTGCACTGAAGAGAGCACAGGCTCACCAGAGAAGAGGTTCCATTGAGCAACAGCAACAGCAGCCACTTCTCACTGTGAGGGTTGAGCTTGAACAACTCATCATATCCATTCTTGATGACCCTAGTGTTAGCAGGGTTATGAGAGAAGCTGGATTCTCTAGCACTGCTGTTAAGAACAACATAGAGGACTCTTCTTCATCACCTTCTTCTGTTTTTCAGTGTTACAACACCTCTGGTGGTGTGTTTTCTTCTCCTTGTTCACCTTCTGCTAGTGAGACCAACCCTCTCCGTAGTTTCAGGCAGAACCATTTCTTGTCTGCTTACACTTCTGAGTTCAACAGCCAGGTTCTCTTTTCTCCACCAAAGAAAGCACCATTGTATCCTTATCATACCACTGGTGCAACAACATCTTCTATGAAAGATGATATTAAGGTGGTTTTTGATATCCTCTCGAGGAAGAAGAAAAAGAACACTGTGATAGTTAGTGACTCAGTTTCATTGACTGAAGCCCTTGTGGGAGAGATAATGAGAAGGTTTCAAAGATCAGAGGTACCTGATGAGTTGAAGTCAACACAGTTTATAAAGTTTCAGTTTGCACCAGTTTCTATGTGGTACATGAAAAGGGATGAGGTTGAAATGAAAGTCCAAGAGCTGAAAAGGAAGGTGAACTCTGTTGCATCAGGAGGAGGAGGGGGTGGCATTTTTTATATTGGAGACCTGAAATGGATAATGGAAGGATCTTTCAGTAAAAAACATCAAGAAGGGTCCCTGGATGGTGAAGTTTCTGGCTATAACCCAGTTGATCATTTGGTTTCAGAAATTGGAAAGTTATTCTGTGACTTTGGAACCTCAAACACTAAGGTGTGGCTCATGGCTACTGCAAGTTATCAAACATACATGAGGTGTCAAATTAAGCAATCCCCTCTTGAGTCTCAGTGGAATCTTCAAGCTGTTCCTGTTCCATCAAGTGGACTTTCCTTGAGTCTCCATGCATCCAGTGTCCTTGATTCAAAGATGACCATATCCCAGAACCCATCTCATATGTTGGAAACAAAGCTCTTCAGTAACAAGGAGCAGCAGGATAATCTCTATTGCTGTGAAGAATGTACCTCCAATTATGAAAAGGAAGCTCAATTTCTCAAAACAGACCAGAAAAAAACACTGCCTTTCTGGCTTCAATCTCATGACATGGAAGCAAATCAGAAGGATGAGTTCACCAAATTGAAAACAAAATGGAATAGATTGTGCCACTGCCTCCACCAAAGCCAACAGCATCAGAACAAGGGCAACAGTAATTGGAATGGAAAGATCTACCCCTTTAACTCATCAAGCTCTATATCCTTTGCCAACAATACTTATAGCTCGAGTCATGTACCTTGTTTCCAGCGTCAACGATCATGCATTGAGTTCAATTTCAGTGACAACAAGCAAGCAGCAGAGACAGTCTTGGATTCTGTTGAGGGCATGGCAGAAGGTAAAGAAGTAAAGACTACCCTTGCTCTTGGAAATGGTGGTTCAGGTGAGACGGTGGGGGATATAACTAATAGAACACTCCGAAGAGCTCATATTTGTAAACTATTGCAGGAGAATGTGGCATGGCATTCTGAGACTGTTCCTTCAATAGCTGAGGTCTTGATTGACTCACAATCAGCAAAGCAAAGTAACATTACTTGGTTACTGATGCAAGGTAATGACTCCATTGGAAAAAGAAGGATGGCACTTGCAGTTGCAGAATCAGTTTTTAGCTCGGTTGATAAGTTCCTTCACTTAGACATGCAGAGGAAAGATACTTCAATAGCTCCATTTTCTGACTTGCTGGCAGGAGCTTTGAAAATCCATCAACAGCTTGTTGTGTTTATAGAAAATATTGACTTTGTTGATGCCCAATTCAAGAAATTACTTGCTGGTGGATTTGAAACAGGAAATTTTGGAAATTTAACAAGGAGTGCAGATAAGTTAGGCCAATTGATATTCATATTATCACATGGTGGTTCCACAAGAAGTGAAGAGCATAACCATGACTCTGTGATCAAGTTGTTGTTGCAGGTGAGTGAAACCAAACCAAACTTAGAGGCACCTTGTTTAGGCCTCAAACGCAGGGCTGAACTTGATTTCTTTCCCAACATCAAGAGACCAAAAATTGAAGAGAAGGAAGAGGCATTGTTGGTATCTGAACAAGGTGGCAAAAAGAAAGACTTTTCAAGACAGTCAAGCTTTAACACCCTTGATCTGAATTTGAAGGCTGATGAAGAGGATGATAAAAAATACGACAATAGCCCAAATTCAAGTGATTTAACTAGAGAAACTACGGCTGATTCATTAAACTCAAACTTTTTTCTTGACTCAATTGAGAACCGGTTCGAGTTTAACACAAGTCCAGCTAAGGACAAAGAGATGGCAGAGCTGTTCTTATCTAAGATCAAAGCATCCTTCGACGAGGTATATGGCAAGCAATGTTTGGTTAATTTTAGTGTAGATGAGAGGGTAATTGAGGAAATCTATGTAGGGTGTGGTTACTTTACTAACAGCTTATTTGAGAAATGGCTCAGAGACATTTTTCAAAATAGCTTGCAGACAGTTAGCTTTGGAGGCAAAGAGAGTATAGTTGTTAGGCTTACTTGGGGTGGTAAAGGAGATAGGAAATTGGATAATGGGTTCGTGAGTTCAACTCTACCAAAGGGTATCCAAGTTAAGTACTTAATGGAATGA 3024 0.4173 MRSGGCALQQTLTAEAASVLKHSLGLARRRGHAQVTPLHVAATLLSLRASSFRRGCLKSQPHQTSHPLQCRALELCFNVALNRLPTTPAPLIQNSHQPSFSNALIAALKRAQAHQRRGSIEQQQQQPLLTVRVELEQLIISILDDPSVSRVMREAGFSSTAVKNNIEDSSSSPSSVFQCYNTSGGVFSSPCSPSASETNPLRSFRQNHFLSAYTSEFNSQVLFSPPKKAPLYPYHTTGATTSSMKDDIKVVFDILSRKKKKNTVIVSDSVSLTEALVGEIMRRFQRSEVPDELKSTQFIKFQFAPVSMWYMKRDEVEMKVQELKRKVNSVASGGGGGGIFYIGDLKWIMEGSFSKKHQEGSLDGEVSGYNPVDHLVSEIGKLFCDFGTSNTKVWLMATASYQTYMRCQIKQSPLESQWNLQAVPVPSSGLSLSLHASSVLDSKMTISQNPSHMLETKLFSNKEQQDNLYCCEECTSNYEKEAQFLKTDQKKTLPFWLQSHDMEANQKDEFTKLKTKWNRLCHCLHQSQQHQNKGNSNWNGKIYPFNSSSSISFANNTYSSSHVPCFQRQRSCIEFNFSDNKQAAETVLDSVEGMAEGKEVKTTLALGNGGSGETVGDITNRTLRRAHICKLLQENVAWHSETVPSIAEVLIDSQSAKQSNITWLLMQGNDSIGKRRMALAVAESVFSSVDKFLHLDMQRKDTSIAPFSDLLAGALKIHQQLVVFIENIDFVDAQFKKLLAGGFETGNFGNLTRSADKLGQLIFILSHGGSTRSEEHNHDSVIKLLLQVSETKPNLEAPCLGLKRRAELDFFPNIKRPKIEEKEEALLVSEQGGKKKDFSRQSSFNTLDLNLKADEEDDKKYDNSPNSSDLTRETTADSLNSNFFLDSIENRFEFNTSPAKDKEMAELFLSKIKASFDEVYGKQCLVNFSVDERVIEEIYVGCGYFTNSLFEKWLRDIFQNSLQTVSFGGKESIVVRLTWGGKGDRKLDNGFVSSTLPKGIQVKYLME* 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1019 1007 PANTHER PROTEIN SMAX1-LIKE 5 1 980 - -
Lan12g1019 1007 PANTHER CHAPERONE PROTEIN CLPD, CHLOROPLASTIC 1 980 - -
Lan12g1019 1007 Pfam Clp amino terminal domain, pathogenicity island component 26 46 IPR004176 -
Lan12g1019 1007 Pfam Clp amino terminal domain, pathogenicity island component 133 169 IPR004176 -
Lan12g1019 1007 Gene3D - 9 172 IPR036628 -
Lan12g1019 1007 Gene3D - 601 796 IPR027417 -
Lan12g1019 1007 ProSiteProfiles Clp repeat (R) domain profile. 8 172 IPR004176 -
Lan12g1019 1007 SUPERFAMILY Double Clp-N motif 12 167 IPR036628 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1019 Lan-Chr12 16859418 16863589 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1019 - - gmx:100816045 1312.75
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1019 12 16859418 16863589 Lan1g1253 1 22389298 22393124 LSH
Lan12g1019 12 16859418 16863589 Lan1g0397 1 3153998 3158019 LSH
Lan12g1019 12 16859418 16863589 Lan15g0127 15 953601 957873 PCT
Lan15g0127 15 953601 957873 Lan12g1019 12 16859418 16863589 PCT