Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0796 ATGGCTGCTCTGGAATACTTGGAATCGTTGCGAAACTCGCATCCTGAACTTTCTGAATGGTACAATTCACTCGCAGATCTGTACCAAAAGAAGTTATGGCATCAACTTACTCTCAAGCTTGAACAGTTTGTTGCTCTCGCTGTTTTTCAGGCTGGTGATGCTCTTATACAGTTATATCACAATTTCATCACTGACTTTGAGACAAAAATCAACCTTCTCAAGCTTGCACATTTTGCTGTGATAGTTTCTCGTCAGTATTCTGAGAAAGAAGCTGCTGTTGGTTATCTTGACGGAATCATTGAGAAGCTTCAAGCCACTAGAGAACAGCGAATTGAAGAACCTATTCTTTACATAAAGATGCAAATAGCAATATTTAAGCTTGAGCAGGGTGATCAGAAAGAAAGCAAGAAACTTCTCGAAGATGGAAAGAGTACACTTGACAGCATGACAGATATTGACCCATCTGTGTATGCTAGCTACTATTGGGTATCATCCCAGTATCATAAATCCCGCCAGGAATTTGCTGAGTTCTACAAAAGCGCTCTTCTCTACTTGGCATACACATCAGTAGAGTCTCTCTCAGATTCATTTAAGCTGGATTTGGCGTTTGATTTGTCCCTCTCTGCTTTGCTGGGGGATAACATCTACAACTTCGGGGAGCTACTTGCGCATCCTATAATTAAGAGCCTTCTAGGGACAAAGGTGGAATGGCTTTACTATATTTTGCAGGCATTCAATTCTGGTGATTTAGTTCGATATCAAGAATTATGTCGGGTGCATAATGCTGCTTTAAGGGCTCAACCAGCACTAGTTCAAAATGAACAGAGGCTGTTGGAAAAGATTAACATTCTCTGCCTAATGGAGATTATATTCAGTCGGCCTTCGGAAGATAGAACTATTCCCTTGAGTGTGATTGCAGACCGAACAAAACTTTCTATAGAGGATGTGGAGCATCTCCTCATGAAGAGCCTATCGGTTCACCTAATTGAGGGTATAATTGATCAAGTTGAGGGCACAGTGCATGTTTCCTGGGTGCAGCCAAGAGTTCTGGGAATTCAACAGATCAAATCCTTAAGGGATCGACTGGACGGTTGGACAGGAAAAGTACACACTGCATTGTTGTCCATCGAGGCAGAAACACCTGATTTGATCGGATCATGA 1161 0.4195 MAALEYLESLRNSHPELSEWYNSLADLYQKKLWHQLTLKLEQFVALAVFQAGDALIQLYHNFITDFETKINLLKLAHFAVIVSRQYSEKEAAVGYLDGIIEKLQATREQRIEEPILYIKMQIAIFKLEQGDQKESKKLLEDGKSTLDSMTDIDPSVYASYYWVSSQYHKSRQEFAEFYKSALLYLAYTSVESLSDSFKLDLAFDLSLSALLGDNIYNFGELLAHPIIKSLLGTKVEWLYYILQAFNSGDLVRYQELCRVHNAALRAQPALVQNEQRLLEKINILCLMEIIFSRPSEDRTIPLSVIADRTKLSIEDVEHLLMKSLSVHLIEGIIDQVEGTVHVSWVQPRVLGIQQIKSLRDRLDGWTGKVHTALLSIEAETPDLIGS* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0796 386 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 13 1 385 IPR035298 -
Lan18g0796 386 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 272 365 - -
Lan18g0796 386 ProSiteProfiles PCI domain profile. 174 347 IPR000717 -
Lan18g0796 386 SMART PINT_4 272 365 IPR000717 -
Lan18g0796 386 Pfam PCI domain 238 343 IPR000717 -
Lan18g0796 386 Gene3D - 213 343 - -
Lan18g0796 386 SUPERFAMILY "Winged helix" DNA-binding domain 274 348 IPR036390 -
Lan18g0796 386 PANTHER PROTEASOME COMPONENT (PCI) DOMAIN PROTEIN-RELATED 1 385 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0796 Lan-Chr18 13399602 13404737 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0796 K03039 - gmx:100804455 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0796 18 13399602 13404737 Lan18g0796 18 13399602 13404737 ECH
Lan17g0507 17 3939551 3945229 Lan18g0796 18 13399602 13404737 LSH
Lan18g0796 18 13399602 13404737 Lan6g0469 6 3891458 3896773 LSH