Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1259 ATGAGCCGCCGAAATGGCGTCTACTTTCATAGAAACGGCTGGGAAGCTCCCACATTTGGAGCTCGAGATAGAGGACGATACCCTCAACAACCACCATGGAGAAATCGAAACTGGACCTCAAACTACAGGCCGTTCCGTTCTACTTATATGGCGGGAGAAACATCATGGGTCCGCCGCTATGACAATCCGACACGAAGGGAGACTGGGGAATCTGACCCAATTTCAGAACTCGGTGAGGAAGGTGACAAAGAAGGAACTGTTGTTTGTATAGATGAAAGGTTGCCTGATGACTTGTTGAGAGTCATCCTAGCTTTTCTTCCCGTCGAAAGCATTGCCAAAGCTCGTTGTGTGAGTAAAAAATGGCATGGCATTCTTATTTCCAAGACTTTTTTATGGAACCTTTCACGTATTCCACCACAGAAGCCTTGGTACTTCATGTTTACTAGCTCTGATGAACCGATTGGTTATGCTTATGACCCCATCCTTCGGAAATGGCACAGCATAGAACTTCCATTCATTGGCACTTCTAATTGGTTCATTGCTTCATCGGGTGGCATGGTTAGCTTCATGGACAATGACAGCATGAGCAACTTATGTGTGTGCAACCCTATTACCAAAACCTGCAGGAAGCTCAAGGAGCCACCGGGTTTGACATTTCCTGACTATAGCGCATTAGCGATGTCGGTTAACAGGGAATCTCAGAGTTACACTGTGGCGATTGTGAAATCGAAACAAGTCCCTGAGAACTTTGTCCAGTGGGATATCTCGATTCATATATATGACTCTGAGCAAGTAAAGTGGATGACATCTATAACCGAAGTTTTGTCAGGTTGGAGAAGCGGCGATGAGAGCGTGATATGTAACGGAGTGTTATACTTTTTAGTTTACGCAACCAGGGGTATTCAAACAGAAAATCGCCATGCTCTAATTGCATACAACCTGTCAAACGGTTCTTCTCAAATCCACTTAGCAAGGAACTTTATTCAGGTACCGTGTTCTCTAACATGTGGCCGTCTGATGGATATGAAGGGGAAGCTTGTAATGGTGGGAGGAATCGGTAAACCAGATCGAAGTGACATAATCAAAGGGATAGGAATCTGGATTCTAAATGATAGAAAGTGGGAAGAGATCGGTAGAATGCCGCACAAATTCTTCCAGGGCTTTGGAGAATTAGACGATGTTTTTTCAAGCCGTGGCGCGGAGGATATGATTTATATTCAGAGTTATGGAGCTCCAGCACTTCTGATTTTCGACATGAATAGTAGACATTGGAAGTGGGCACAGAAGTGTCCGGTATCGAAAAGGTTCCCATTGCAGCTTTTCTCTGGTTTTTGCTTTGAGCCTCGGCTTGAAATGACTCCATGGTTCTCTCAAATATGA 1380 0.4464 MSRRNGVYFHRNGWEAPTFGARDRGRYPQQPPWRNRNWTSNYRPFRSTYMAGETSWVRRYDNPTRRETGESDPISELGEEGDKEGTVVCIDERLPDDLLRVILAFLPVESIAKARCVSKKWHGILISKTFLWNLSRIPPQKPWYFMFTSSDEPIGYAYDPILRKWHSIELPFIGTSNWFIASSGGMVSFMDNDSMSNLCVCNPITKTCRKLKEPPGLTFPDYSALAMSVNRESQSYTVAIVKSKQVPENFVQWDISIHIYDSEQVKWMTSITEVLSGWRSGDESVICNGVLYFLVYATRGIQTENRHALIAYNLSNGSSQIHLARNFIQVPCSLTCGRLMDMKGKLVMVGGIGKPDRSDIIKGIGIWILNDRKWEEIGRMPHKFFQGFGELDDVFSSRGAEDMIYIQSYGAPALLIFDMNSRHWKWAQKCPVSKRFPLQLFSGFCFEPRLEMTPWFSQI* 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1259 459 Gene3D - 84 133 - -
Lan16g1259 459 SMART fbox_2 94 134 IPR001810 GO:0005515
Lan16g1259 459 Gene3D - 140 446 IPR015915 GO:0005515
Lan16g1259 459 TIGRFAM F_box_assoc_1: F-box protein interaction domain 187 377 IPR017451 -
Lan16g1259 459 PANTHER F-BOX FAMILY PROTEIN 34 454 IPR045048 -
Lan16g1259 459 Pfam F-box domain 93 124 IPR001810 GO:0005515
Lan16g1259 459 PANTHER BNAA09G39300D PROTEIN 34 454 - -
Lan16g1259 459 MobiDBLite consensus disorder prediction 60 80 - -
Lan16g1259 459 SUPERFAMILY Galactose oxidase, central domain 147 433 IPR011043 -
Lan16g1259 459 ProSiteProfiles F-box domain profile. 88 135 IPR001810 GO:0005515
Lan16g1259 459 SUPERFAMILY F-box domain 92 156 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1259 Lan-Chr16 20599526 20604150 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1259 - - lang:109329535 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0595 19 11240092 11242353 Lan16g1259 16 20599526 20604150 LSH
Lan16g1259 16 20599526 20604150 Lan11g0976 11 10525542 10528388 PCT
Lan11g0976 11 10525542 10528388 Lan16g1259 16 20599526 20604150 PCT