Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0179 ATGGAAACTCGTAGTCGGAAGCGGGCGGAGGCTTCCTCACCTGCCCCTTCATCTTCTTCTTCTCCTCGTCCCACTACTCGTTCAACCAAGCGCCCTCGTCTTTCTTCTTCTGCCACCGCAACCGCCGCCACAACCACCACTTCAACCACAACAACTCCGTCTCGTTCGGTCAACACTCGCTCCCGCGCATCCAGGACTAAGGAACCCCTGCCGCCTAAAAACCCTCCTCCTATGGACCCCACCAATGAATCCTCTGGCTCGCGTGGTCGACGTGGCAAGAACGCTGATAGGGGCAATTCCGACAAGGGTAAAGAGAAGGAGCATGATGTGAGGATAAGGGAAGCGGAGAAGGGGATTGCTTTGAAAATGGAAAGTAGTGGCGTTGGGGATGGTGATGGTGATGATAATGATAACGAGGGCGGCGTTGGTCATCAGAATGTGACGTCAGCGAGTAGTGCTCTTCAAGGGCTTCTTCGGAAACTTGGTGCTGGTTTGGATGATCTGCTTCCTTCGTCAGCCATGGGTTCTGGCTCGCATCAGAGTGCGAGGTTGAAGAAGATCCTTGCTGGATTGCGTGCTCAAGGAGAAGAAGGTCGCCAGGTTGAGGCATTGACTCAGCTCTGTGAAATGCTTTCAATAGCGTCGGAGGATTCGCTTAGTAATTTCTCAGTTGATTCATTTGTTCCAGTACTAGTTGGGTTGTTGAATCATGAGAGCAATCCTGATATCATGCTTCTTGCTGCTAGGGCGCTGACCCATTTATGTGATGTGCTACCTTCATCGTGTGCTGCGGTCGTGCATTATGGTGCGGTGTCAATTTTCTGTGCGAGACTGCTCACAATTGAGTATATGGACTTAGCTGAACAGTCTCTTCAAGCTCTAAAGAAGATATCTCAGGAGCACCCAACTGCCTGCTTACGAGCTGGCGCTCTTATGGCTGTGCTTTCTTATTTGGATTTCTTCTCAACTGGAGTTCAGAGGGTGGCATTGTCTACTGCTGCAAATATGTGCAAGAAGCTTCCTTCAGATGCAGCTGATTTTGTGATGGAAGCGGTTCCTCTTTTGACGAACCTCCTTCAATACCATGATGCAAAGGTATTGGAGCATGCTTCTGTTTGTTTGACTCGAATAGCTGAAGCATTTGCATCATCTCCAGACAAATTAGATAAATTGTGCAATCATGGACTAGTAACACAAGCAGCATCCCTCATTTCTACCAGCAGCTCTGGTGGTGGACAGGCTTCTCTCAGCGCATCAACATATACTGGTCTAATCCGGCTTCTTTCAATTTGTGCAAGTGGGTCCCCTCTTGGAGCTAAGAGTCTGCTTCTCCTTGGAATTAGTGGCATTCTTAAAGATATTCTCTCTGGTTCTGGTGTTTCTTCCAATGCCTCTGTTTCTCCTGCATTGAGTAGGCCACCAGATCAGATATTTGAGATTGTGAACCTGGCAAATGAGCTTCTACCCCCATTGCCAAAAGAAACAATTTCCCTTCCAGTCAGCTTGAACTTGTTTGTGAAAGTGCCCATTGTAAATAAGTCCTCTGCTGGCAGTTCTGGGAAAGAAGAGACAAATGGAAATGCTCCTGAGATATCGGCTCGTGAGAAGCTATTGAATGATCAGCCTGAGTTACTTCAACAATTTGAGATGGATCTCCTCCCAGTTTTAATACAGATATATGGTTCAAGTGTCAATGGCCCTGTTCGGCACAAATGTCTGTCTGTCATTGGAAAATTGATGTATTTCAGCACTGCAGAGATGATCCAGGCCTTATTTAGTGTAACCAATATATCAAGTTTCTTAGCTGGTGTCTTAGCATGGAAAGATCCACACGTTTTAGTTCCGGCTTTGCAAATTGCTGAAATTCTTATGGAAAAGCTTCCTGGGACATTCAGTAAGATGTTTATCAGAGAGGGTGTTGTCCATGCGGTGGACCAGCTTATTTTGGCTGGAAACCCAACTAATGTCTCTACCCAAGCATCTTCTGCTGAGAAAGACAACAATTCTGTATCTGGACCATCATCTCGTGCTAGGCGTTATCGGCGACGCAGTGGTAACAACAATCCTGATGGAAATCATTTGGATAATTCAAAGTGTCCAGTTTCGGTAAATGTTGGTTCACCACCGAGCTCTGTGGATATTCCAACAACAAATTCCAGTATCCGGTTATCTGTTAGCGCAGCTGCTAGAGCTTTTAAAGATAAACACTTCCATTCTGATCTCGGGGCTATTGAAGTGGGTGTTACTGATGATCTTTTGCATCTGAAAAATCTTTGCATGAAGTTAAATGCTAGTGTTGATGACCAAAGAACGAATGGAAAGGGGAAATCTAAAACTTCTGCCTTTGGTCTGGAAGAGAATTCTGCGAACAAAGAAGAGTATTTTGTTGGGGTGTTATCTGACATACTGAATGAACTTGGCAAAGGAGATGGCGTATCCACATTTGAATTTATTGGAAGTGGTGTTGTTGCAGCTTTGCTGAATTATTTTTCTTGTGGGTATTTCTCTGAAGATCGAATATCAGAAACCAACTTGCCCAAGCTTCGCCAACAAGCACTTACAAGGTTTAAGTCATTTATAGCTGTTGCACTACCTGCCAGTATCGGCAATCAGGTTATGACTCCTATGTCTGTCCTAGTCCAGAAGCTTCAAAACGCGTTGTCATCTTTGGAGCGTTTCCCTGTTGTGCTGAGCCATTCAGCTAGGTCATCTAGTGGAAGCACAAGACTCTCCTCTGGACTAAGTGCATTATCACACCCCTTCAAGTTGCGTCTCTGTCGAGCCCCAGGTGAAAAGTCACTTCGGGACTATTCATCCAATGTTGTATTGATTGATCCATTAGCAAGTTTAGCAGCCATTGAGGAGTTCCTTTGGCCTCGTATCCAGCGAAGTGAATCGGCTCAAAAGTCAACTGTACCCATAGGGAATTCTGAACCTGGGACAACTGCTGGAACTGGTATTTTATCTCCTTCCACCTCTACTCCTGCAACTACTCGTCGTCAATCTACTAGATCCAGAGCATCTGTTAATATAGGTGATACGCCCAAAAAAGAAATTACTCAAGACAAGAGCACAAGCTCATCTAAGGGGAAGGGAAAAGCTGTATTAAAGCCTGCACAAGAAGAGGCAAGGGGGCCTCAAACCAGGAATGCTGCACGTAGAAAAGCAGCTCTTGACAAAGACGCTCAAATGAAGACTGTAAATAGCGACTCTACTTCTGAGGATGAAGATTTGGATATATCTCCTGTTGAGATTGATGAGGAATTGATGATTGATGATGATGATGATATATCTGATGATGAAGATGATGAACATGAAGATATGTTGAGGGATGTTTCTCTCCCTGTTTGCTTGCCTGACAAAGTACATGATGTTAAATTGAGTGACTCTGCTGAGGAGTGCACTGTTGCTCCTGCAACAAGTGATGGCCAGACTAATGCAGCCTCAGGTTCTAGTAGCAAAGTTGGTACAGCCAGGGGATCAGACACTGCTGAGTTTAGGAGTGGCCATTCTTTTAGCTCAAGGGGTGCATTGTCATTTGCTGCTGCTGCTATGGCTGGACTTGGGTCTGTTAATAGCAGAGGTATCCGGGGTGGCAGGGATAGGCATGGGCATCCCTTGTTTGGTGCTTCTAATGATCCCCCAAAGTTGATCTTCATTGCTGGTGGGAAGCAGCTTAATAGGCATTTGACTATATATCAGGCAATTCAGAGACAGCTTGTTGTAGATGAAGATGACGAGGAGAGGTTTGCTGGCAGTTCCTTTGTTTCTAGTGATGGAACTAGGTTGTGGGGAGATATATACACACTAACTTATCAGAGGGCTGAGAATCAAACGGACAGGGCTTCTACCGGAGGTTCATGCTTAAATGTTTCAAAATCTGGAAAATCTGGGTCTGCATCAAATTCTAGTTCTGAAGCCAAGTTGCATCGATCTTCTGTTCTTGATAGCATCTTGCAGGGAGAATTGCCCTGTGAGCTGGAGAAGTCTAATCCTACATACAACATATTGGCACTATTGCGTGTGCTTGAGTGTTTGAACCAGATAGCACCCCGTTTAAGGGTCCAAGTGGTTACTGATAACTTTGCTATGGGAAAATCTTTGGATTTAGATGAGCTAGGTGTCACCAGTGGTGTTATGGTTCCTCCAGAGGAATTCATCAGCAGCAAACTTACTCCAAAATTAGCTAGGCAAATACAAGATGCCCTAGCATTATGCTGTGGGAGTCTTCCCCCATGGTGTTACCAGTTAACTAAAGCATGCCCGTTTTTGTTCCCTTTTGAGACCCGGCGGCAGTACTTCTATTCTACTGCCTTCGGGTTATCTCGTGCTCTACATCGACTGCAGCAGCAAGAAGGTGCAGATGGTCATGGATCAACAAATGAAAGAGAGGTGAGGGTTGGGAGATTGCAGCGCCAGAAAGTCCGTGTTACTCGAAATCGTATTTTGGATTCTGCTGCTAAAGTGATGGAGATGTATTCTAGCCAAAAGGCTGTACTTGAAGTAGAATATTTTGGTGAAGTTGGCACTGGCCTCGGTCCCACCCTTGAGTTTTATACACTTATTAGTCACGACTTGCAAAAGGTTGGACTGCAAATATGGAGATCAGATTCTTCTGAGAACTTTCAAATGGAAATTGATGGAAATGAAAAGAAAAGTCAAAGCATTGAAAGCTCTTTTGCTGGAGATGCAGAACTTGTTCAGTCTCGTTTTGGATTGTTTCCCCGGCCTTGGCCTGCAAATTCCGATGCATCTGAGGGTAGCCAGTTTTATAAAGTGATTGAATATTTCCGGTTGATAGGCCGTGTAGTTGCTAAAGCCCTTCAAGATGGACGCTTACTGGATTTGCCATTATCGGCGTCATTTTATAAGCTCGTTCTTGATCAAGAGCTTGATTTGCATGACATTCTTGTTATTGATGCTGGGCTTGGTAAAACTTTGCAAGAGTTGAATGCCCTTGTGTGCCGGAAAAATTATTTAGAATCTTGTGGTAGCTATACTGATAAGATTGCTAATTTACATTTTCGTGGATCCCCAATTGAAGATCTCTGCTTGGATTTCACACTCCCTGGTTATCCAGAATGCATTTTGAAACCGGGAGATGAAATTGTTAACATCAATAATTTGGAGGAGTACATTTCCATGGTGGTTGATGCAACTGTCAAGACTGGAATCATGCGTCAAATAGAAGCATTTAGAGCAGGATTCAATCAGGTTTTTGACATTTCAAGTCTACAAATTTTTACTCCCCAAGAACTGGACTATTTGCTTTGTGGTCGTAGAGAGTTGTGGAAGGCTGAGACACTAGCCGATCATTTAAAGTTTGATCATGGGTACACTGCCAAGAGCCCTGCTATAGTTAATTTACTTGAAATAATGGGAGAGTTCACACCAGAGCAGCAGCGTGCCTTCTGTCAATTTGTTACTGGTGCACCTAGGTTGCCACCTGGTGGACTGGCTGTTCTAAATCCAAAACTAACAATCGTGAGAAAGCTTTCGTCAACTGCGGCTAATGTTTCATCTAATGGGAATGGACCTTCTGAATCAGCTGATGATGACTTGCCAAGTGTGATGACATGTGCTAATTACCTGAAGCTTCCTCCTTACTCTACAAAGGAAATTATGTACAAGAAGCTACTCTATGCAATCACTGAAGGCCAGGGATCCTTTGATTTATCATGA 5682 0.4451 METRSRKRAEASSPAPSSSSSPRPTTRSTKRPRLSSSATATAATTTTSTTTTPSRSVNTRSRASRTKEPLPPKNPPPMDPTNESSGSRGRRGKNADRGNSDKGKEKEHDVRIREAEKGIALKMESSGVGDGDGDDNDNEGGVGHQNVTSASSALQGLLRKLGAGLDDLLPSSAMGSGSHQSARLKKILAGLRAQGEEGRQVEALTQLCEMLSIASEDSLSNFSVDSFVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCAAVVHYGAVSIFCARLLTIEYMDLAEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVALSTAANMCKKLPSDAADFVMEAVPLLTNLLQYHDAKVLEHASVCLTRIAEAFASSPDKLDKLCNHGLVTQAASLISTSSSGGGQASLSASTYTGLIRLLSICASGSPLGAKSLLLLGISGILKDILSGSGVSSNASVSPALSRPPDQIFEIVNLANELLPPLPKETISLPVSLNLFVKVPIVNKSSAGSSGKEETNGNAPEISAREKLLNDQPELLQQFEMDLLPVLIQIYGSSVNGPVRHKCLSVIGKLMYFSTAEMIQALFSVTNISSFLAGVLAWKDPHVLVPALQIAEILMEKLPGTFSKMFIREGVVHAVDQLILAGNPTNVSTQASSAEKDNNSVSGPSSRARRYRRRSGNNNPDGNHLDNSKCPVSVNVGSPPSSVDIPTTNSSIRLSVSAAARAFKDKHFHSDLGAIEVGVTDDLLHLKNLCMKLNASVDDQRTNGKGKSKTSAFGLEENSANKEEYFVGVLSDILNELGKGDGVSTFEFIGSGVVAALLNYFSCGYFSEDRISETNLPKLRQQALTRFKSFIAVALPASIGNQVMTPMSVLVQKLQNALSSLERFPVVLSHSARSSSGSTRLSSGLSALSHPFKLRLCRAPGEKSLRDYSSNVVLIDPLASLAAIEEFLWPRIQRSESAQKSTVPIGNSEPGTTAGTGILSPSTSTPATTRRQSTRSRASVNIGDTPKKEITQDKSTSSSKGKGKAVLKPAQEEARGPQTRNAARRKAALDKDAQMKTVNSDSTSEDEDLDISPVEIDEELMIDDDDDISDDEDDEHEDMLRDVSLPVCLPDKVHDVKLSDSAEECTVAPATSDGQTNAASGSSSKVGTARGSDTAEFRSGHSFSSRGALSFAAAAMAGLGSVNSRGIRGGRDRHGHPLFGASNDPPKLIFIAGGKQLNRHLTIYQAIQRQLVVDEDDEERFAGSSFVSSDGTRLWGDIYTLTYQRAENQTDRASTGGSCLNVSKSGKSGSASNSSSEAKLHRSSVLDSILQGELPCELEKSNPTYNILALLRVLECLNQIAPRLRVQVVTDNFAMGKSLDLDELGVTSGVMVPPEEFISSKLTPKLARQIQDALALCCGSLPPWCYQLTKACPFLFPFETRRQYFYSTAFGLSRALHRLQQQEGADGHGSTNEREVRVGRLQRQKVRVTRNRILDSAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLISHDLQKVGLQIWRSDSSENFQMEIDGNEKKSQSIESSFAGDAELVQSRFGLFPRPWPANSDASEGSQFYKVIEYFRLIGRVVAKALQDGRLLDLPLSASFYKLVLDQELDLHDILVIDAGLGKTLQELNALVCRKNYLESCGSYTDKIANLHFRGSPIEDLCLDFTLPGYPECILKPGDEIVNINNLEEYISMVVDATVKTGIMRQIEAFRAGFNQVFDISSLQIFTPQELDYLLCGRRELWKAETLADHLKFDHGYTAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTAANVSSNGNGPSESADDDLPSVMTCANYLKLPPYSTKEIMYKKLLYAITEGQGSFDLS* 1894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0179 1893 MobiDBLite consensus disorder prediction 1073 1106 - -
Lan13g0179 1893 SMART hect_3 1484 1893 IPR000569 GO:0004842
Lan13g0179 1893 MobiDBLite consensus disorder prediction 10 65 - -
Lan13g0179 1893 PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIP12 58 1893 IPR045322 GO:0006511|GO:0061630
Lan13g0179 1893 CDD HECTc 1473 1888 IPR000569 GO:0004842
Lan13g0179 1893 MobiDBLite consensus disorder prediction 656 716 - -
Lan13g0179 1893 SUPERFAMILY ARM repeat 183 651 IPR016024 -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 1 146 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 967 1010 - -
Lan13g0179 1893 PANTHER HECT E3 UBIQUITIN LIGASE-RELATED 58 1893 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 89 120 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 656 675 - -
Lan13g0179 1893 Pfam HECT-domain (ubiquitin-transferase) 1565 1893 IPR000569 GO:0004842
Lan13g0179 1893 MobiDBLite consensus disorder prediction 689 716 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 1136 1168 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 1279 1308 - -
Lan13g0179 1893 Gene3D Hect, E3 ligase catalytic domain 1764 1891 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 1047 1061 - -
Lan13g0179 1893 Gene3D - 186 663 IPR011989 -
Lan13g0179 1893 SMART arm_5 215 256 IPR000225 GO:0005515
Lan13g0179 1893 SMART arm_5 298 338 IPR000225 GO:0005515
Lan13g0179 1893 SMART arm_5 341 379 IPR000225 GO:0005515
Lan13g0179 1893 ProSiteProfiles HECT domain profile. 1594 1893 IPR000569 GO:0004842
Lan13g0179 1893 SUPERFAMILY Hect, E3 ligase catalytic domain 1465 1886 IPR035983 GO:0004842
Lan13g0179 1893 Gene3D Hect, E3 ligase catalytic domains 1414 1656 - -
Lan13g0179 1893 MobiDBLite consensus disorder prediction 967 1106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0179 Lan-Chr13 1097824 1108718 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0179 K10590 - gmx:100783336 2861.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan13g0179 13 1097824 1108718 Lan13g0179 13 1097824 1108718 ECH
Lan7g0113 7 648416 659041 Lan13g0179 13 1097824 1108718 LSH
Lan8g1829 8 24712134 24723219 Lan13g0179 13 1097824 1108718 LSH