Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1143 ATGTCAGGTGTGTCGCAGAACAGTATTAGAAAAGCACTTGGAGCCCTCAAAGACACCACAACAGTTTCATTGGCTAAAGTCCAAAGTGGTTACAAGGATTTGGACATTGCTATAGTCAGAGCCACAAATCATGTTGAACATCCCGCGAAGGAAAAACATATAAGAGCTATATTTTCAGCAGTCTCAGCTACAAGACCTCGCGCTGATGTTGCCTATTGCATTCATGCTCTTGCAAGGAGATTATCAAGGACACATAACTGGGCGGTTGCATTGAAGACTTTAATAGTTATTCACCGCGCTATGAGGGAAGTGGATCCCACGTTTCACGAAGAACTAATTAATTATGGCAGACGTAAAAGTCATATGCTCAATATGTCTCATTTTAAAGATGATTCCAGCCCAAATGCATGGGATTATTCTGCATGGGTGCGCACTTACGCATTATTTTTGGAGGAAAGGCTGGAATGTTTTCGTGTGTTGAAGTATGACGTTGAGGCAGACCGTCCTAGGACCAAGGATTTGGATACTGTTGAATTGCTAGAGCAGTTGCCAGCTTTACAACAACTTCTCTTTCGAGTTATTGGTTGCCAGCCAGAAGGGGCAGCTGTGCATAACTTTGTCATTCAGTTAGCACTCTCATTGGTTGCTTCGGAAAGCATTAAAATTTATCAAGCTATTAGTGATGGCACAGTCAATATGGTTGATAAGTTTTTTGACATGCAACGCCATGATGCTGTGAAAGCTCTTAATATATACAGGAGGGTTGGACAGCAGGCTGAGAGACTGTCAGAATTTTATGAAATATGCCGTAATGTTGATATTGGACGTGGAGAGAAGTTTATTAAAGTTGAGCAGCCCCCTCCATCATTTCTGCAAGCCATGGAAGAGTATGTCAAAGATGCTCCTCACGGATCGGTAGTTCGCAAGGATCAGGCCACTGATTACAAAGTTGGCTCTCCAAAAGAGGTCTTGGCTAGCGAATACAAAAGGACACCAGAAAAGGAGGAACGTCCACCCTTGCCCACTCTACTTCCACCACACGAACCCTTAAAAGTGGAGGCACCAGTAGTTCAACCACCTCCTGATTTGCTGAATTTGGAGGACCCTGTTCCTGCTGCTTTAGAGTTAGAAGATAAGAATGCCTTGGCTTTAGCAGTCATCCCTGATGCTGATCAACCAAATTCTGCTGTTCCAAATCTAGCAAATGGAAGTATAGGTTGGGAATTGGCACTTGTCACAGCTCCTAGTTTAAATGAGAGTTCTGCGACAGCTAGCAAACTGGCTGGAGGTCTGGACAAGCTTACATTAGACAGCCTATATGATGATGCAATCAGGAGAAACAACCAGAATGCTAGCTATAACCCATGGGAGCCAGCACCAATGGGAGGCATGATACAACCAACAATGCACAATCCATTTTCCGCCTCTAGTACAGTGGTCGCTCCACCTTCTTTTCAAACGCCACCTATTTCTACCCAGCAGCAAGCTTTCACCTTTCAACAGCAACAACACACGACGATTGCCCCTCAACAACCATATGTAAATCCTTTTGAAAATCCTAATGGAGCCGCTGCCCATCCTTATGGCTCAGGTATGCCTGTTCAATCACAAAATCCATATACAGGCCTCATCTAG 1635 0.4416 MSGVSQNSIRKALGALKDTTTVSLAKVQSGYKDLDIAIVRATNHVEHPAKEKHIRAIFSAVSATRPRADVAYCIHALARRLSRTHNWAVALKTLIVIHRAMREVDPTFHEELINYGRRKSHMLNMSHFKDDSSPNAWDYSAWVRTYALFLEERLECFRVLKYDVEADRPRTKDLDTVELLEQLPALQQLLFRVIGCQPEGAAVHNFVIQLALSLVASESIKIYQAISDGTVNMVDKFFDMQRHDAVKALNIYRRVGQQAERLSEFYEICRNVDIGRGEKFIKVEQPPPSFLQAMEEYVKDAPHGSVVRKDQATDYKVGSPKEVLASEYKRTPEKEERPPLPTLLPPHEPLKVEAPVVQPPPDLLNLEDPVPAALELEDKNALALAVIPDADQPNSAVPNLANGSIGWELALVTAPSLNESSATASKLAGGLDKLTLDSLYDDAIRRNNQNASYNPWEPAPMGGMIQPTMHNPFSASSTVVAPPSFQTPPISTQQQAFTFQQQQHTTIAPQQPYVNPFENPNGAAAHPYGSGMPVQSQNPYTGLI* 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1143 544 SUPERFAMILY GAT-like domain 169 300 - -
Lan12g1143 544 SMART enth_2 32 164 IPR013809 -
Lan12g1143 544 Pfam ANTH domain 33 300 IPR011417 GO:0005543
Lan12g1143 544 Gene3D - 7 164 IPR008942 -
Lan12g1143 544 Gene3D ANTH domain 165 312 IPR014712 GO:0005545|GO:0030136|GO:0030276|GO:0048268
Lan12g1143 544 CDD ANTH_N 34 157 - -
Lan12g1143 544 MobiDBLite consensus disorder prediction 325 347 - -
Lan12g1143 544 MobiDBLite consensus disorder prediction 522 544 - -
Lan12g1143 544 ProSiteProfiles ENTH domain profile. 26 164 IPR013809 -
Lan12g1143 544 PANTHER CLATHRIN ASSEMBLY PROTEIN 1 523 IPR045192 GO:0048268|GO:0072583
Lan12g1143 544 SUPERFAMILY ENTH/VHS domain 32 165 IPR008942 -
Lan12g1143 544 PANTHER OS06G0175500 PROTEIN 1 523 - -
Lan12g1143 544 MobiDBLite consensus disorder prediction 326 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1143 Lan-Chr12 17756651 17761875 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1143 K20043 - gmx:100815239 850.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1143 12 17756651 17761875 Lan1g1138 1 21455560 21460884 LSH
Lan12g1143 12 17756651 17761875 Lan1g0252 1 1842283 1847609 LSH
Lan12g1143 12 17756651 17761875 Lan3g0814 3 15261005 15269071 PCT
Lan3g0814 3 15261005 15269071 Lan12g1143 12 17756651 17761875 PCT