Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1136 ATGGGTTCTCAAATAAGGCCTCTTTTGGCTATGTCTTCATACTTGTTATGTTTCAGCTTCATTGTAGTGAATGCTGTGAATGAAGAAAAAAAAGGATATTCATTTGAAAAAGGTTTTGTTTTTATTAATGAAACATCTTTTATTGGAAAGATTGAAGATGATTTTGTTTGTGCTACTCTGGATTGGTGGCCCACTCAGAAATGTGACTATGGAAGATGCAGTTGGGGTCATGCTTCTCTTCTCAATCTGGACCTCAAAAACAATGTTTTGTTAAATGCAGTAAAAGCCTTTTCACCCTTGAAAATTAGATTAGGAGGCACTTTGCAAGACAAGGTCACATATGGGACTGAAGATTATCACCATCCTTGTACTCCTTTTGTTCGGAACACTAGTCGAATGTTTGATTTCACTAAAGGGTGCTTACCCATGCATAGGTGGGACGAGCTAAACAGCTTTTTCAAAAAAGCAGGGGCTAAGATTATATTTGGATTGAATGCTCTTAATGGAAAATCTATACAGTCTGGTTCTGCAGTTGGACCTTGGAACCACACCAATGCAGAATCTTTTATACGTTACACCGTAAAAAAGAACTACACCATTCATGGTTGGGAACTTGGCAACGAATTGAGTGGGAAAGGAATTGGAGCAAGTATTTCTGCAGATCGATATGCTTCTGATGTTTCTACTTTACGACACATGATTGAAGATGTATATAGAGGGATTAAGCCTAAGCCATTAGTAATTTCACCTGGAGGCTTCTTCGATGCAACTTGGTTCAAAGAATTTGTAACCAAAGCGGGTAAATCAGTGGATGTGATAACTCACCACATTTATAATCTCGGACCAGGAGTTGATGAGCACATAAGTAAGAAAATTCTTGACCCTTCATATCTTGATGGAGAGGCTAAAACATTCAATAGTCTCAAAAATATACTTCAAAGTTCCGGAACCTCAGCAACGGCATGGGTTGGTGAGGCAGGAGGGGCTTACAATAGTGGTCGCCATCTTGTTTCTGATGCATTTGTTAACAGCTTTTGGTATTTGGATCAGCTTGGAATGTCAGCTACTTATGACACTAGAGCCTATTGCAGACAAACTTTGGTAGGAGGAAACTATGGTTTACTGAATGTTAGTACTTTCATGCCAAATCCAGACTACTATAGTGCTCTTCTATGGCACCGACTCATGGGACATCGAGTCCTGGCAGCTAGATTCTCCGGGACAAAGAAGATAAGAGCTTATGCACACTGTGCAAAGCAACAAAAAGGAATCACAATACTGTTACTTAACTTGGGGAACTCCACTGTTCTAGCAGAAGTGTCCTTAAAATTTACCAAGCCACCTCATGATCATGTAAAATTCAGAGAAGAGTATCATTTAACAGCAAAGAATCAGAATTTACATAGTCAAGTCATGTTACTAAATGGTAACATTCTACGTGTGAACAAAGATGGTGCTATTCCTCCTTTGAAGCCTGTACATGTAGACCCATCAAAGCCAATAGTAGTTACTCCACTTTCTGTTGTATTTGCACATATACCAGATGTTATTATTCCAGCTTGCACCTAG 1569 0.3913 MGSQIRPLLAMSSYLLCFSFIVVNAVNEEKKGYSFEKGFVFINETSFIGKIEDDFVCATLDWWPTQKCDYGRCSWGHASLLNLDLKNNVLLNAVKAFSPLKIRLGGTLQDKVTYGTEDYHHPCTPFVRNTSRMFDFTKGCLPMHRWDELNSFFKKAGAKIIFGLNALNGKSIQSGSAVGPWNHTNAESFIRYTVKKNYTIHGWELGNELSGKGIGASISADRYASDVSTLRHMIEDVYRGIKPKPLVISPGGFFDATWFKEFVTKAGKSVDVITHHIYNLGPGVDEHISKKILDPSYLDGEAKTFNSLKNILQSSGTSATAWVGEAGGAYNSGRHLVSDAFVNSFWYLDQLGMSATYDTRAYCRQTLVGGNYGLLNVSTFMPNPDYYSALLWHRLMGHRVLAARFSGTKKIRAYAHCAKQQKGITILLLNLGNSTVLAEVSLKFTKPPHDHVKFREEYHLTAKNQNLHSQVMLLNGNILRVNKDGAIPPLKPVHVDPSKPIVVTPLSVVFAHIPDVIIPACT* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1136 522 PANTHER HEPARANASE-LIKE PROTEIN 3 450 521 - -
Lan12g1136 522 PANTHER HEPARANASE-LIKE PROTEIN 3 10 441 - -
Lan12g1136 522 PANTHER HEPARANASE-RELATED 450 521 - -
Lan12g1136 522 PANTHER HEPARANASE-RELATED 10 441 - -
Lan12g1136 522 Pfam Glycosyl hydrolase family 79, N-terminal domain 39 352 IPR005199 GO:0016020|GO:0016798
Lan12g1136 522 Gene3D Glycosidases 73 394 - -
Lan12g1136 522 SUPERFAMILY (Trans)glycosidases 51 396 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1136 Lan-Chr12 17703665 17706739 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1136 32 522 Glycoside Hydrolase AT5G61250 47.399 3.76e-176 505
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1136 K07964 - gmx:100778008 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1136 12 17703665 17706739 Lan1g1151 1 21531032 21534567 LSH
Lan12g1136 12 17703665 17706739 Lan1g0267 1 1964290 1967808 LSH
Lan12g1136 12 17703665 17706739 Lan15g0247 15 2786498 2790608 PCT
Lan15g0247 15 2786498 2790608 Lan12g1136 12 17703665 17706739 PCT