Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1003 ATGGCCAAGAACTATCCTTTTCCTACATACTTGATTCCACTGTTACTAACCATAATCCTTTTGATATCCACAGTGAGCAAAACCAAGGGATGGAAAACAATGCTACCACCAGAACTTGCCATTGATAAAAGCATATCCCAAAATCTCCGCAACGACATCGAAACCATTCAATTGGCTTCTAAAGACTATGGAAACATCATGCAAGAATTCCCAGCAGCTGTGTTTCATCCATCTTCTATAAATGACATAGCAAGCTTGATAAAACTCTCATACAATAGCTCAGTCCCTTTCACTATAGCTGCAAGGGGACAAGGCCACTCAATTAGTGGACAAGCCATGGCTCGTGATGGTGTTGTTGTTGATATGGCAAGTTTCAGAAAACAAAGAAATGGGGTTGGAATTAGTGTTCATGAAGACCCTTTTATTGGTTACTATGCTGATGTTGGTGGTGAACAACTTTGGATTGATGTGCTGCATAAAACGCTTGAACATGGAGTTGCACCGGTTTCTTGGACTGATTATTTGTACTTGACTTTGGGAGGAACCCTTTCCAATGCTGGGATTAGTGGCACTACATTCCGTTATGGACCTCAAATCACCAATGTTCATGAAATGGATGTGATTACAGGAAAGGGAGATTTGGTGACGTGCTCTTCTCAAGAGAATTCAGAGTTATTTCACGCCGTTCTTGGAGGATTAGGGCAATTTGGAGTTATAGCAAGGGCAAGAATCGCTCTTAAGCCAGCACCTAAAAGGGTTAAGTGGGTCAGACTACTATATAGTGACTTTTCTGATTTTACCAAAGACCAAGAACGATTAATTTCAATGGATGGAATAAGGACACAACATATTGCATTGGATTATTTAGAAGGGATGCTACTAATGCACCAAGGTCCCATAAACAATTGGAGATCTTCTTTCTTCCCTCTATCTGAACATCCCAGAATAGCTTCTTTAATCACTAAACATAACATCATTTACTGTCTTGAAGTGGCTAAATATTATGATGAACAATCTGAAAAAAATGTGAACAAGGGAATTCAAGATTTACTCCAGGGACTGGACTATGTTCCAGAATTTTATTACGAGAAAGATGTTACATTTGTTGAGTTTTTGAATAGAGTCAGAAGTGGAGAGCTTAAGCTTCAGTCTCAAGGATTATGGGATGTTCCTCATCCATGGCTTAATTTGTTTATACCAAGATCTCAAATCATGGATTTTAATTCAGGTGTATTCAATGATATCATTCTTAAAAGGAACATCACAAATGGACCTGTCTTAGTTTACCCCATGCATGGAAGCAAGTGGGATGATAGAATGTCAGCATCTATACCAGATGAGGAAATCTTCTACACAATTGGATTTTTGCACTCAAGTGGGTTTGATAATTGGAAAGAATTTGATGATCAAAATAGAGACATTTTGCAGTTTTGTAATGATGCTGGCATTAAAGTTAAGCAATATTTTCCCCATTACAACACACAGGAGGGTTGGGCCAACCATTTTGGCATTAAATGGAGGAGTTTTGTAGAGAGAAAACATCAGTTTGATCCAAGAATGACCCTATCACCAGGACAAAAAATCTTTGAGTACAATCCAAACCAGCGTTTTAAATCCCTTCCACAATGA 1629 0.3855 MAKNYPFPTYLIPLLLTIILLISTVSKTKGWKTMLPPELAIDKSISQNLRNDIETIQLASKDYGNIMQEFPAAVFHPSSINDIASLIKLSYNSSVPFTIAARGQGHSISGQAMARDGVVVDMASFRKQRNGVGISVHEDPFIGYYADVGGEQLWIDVLHKTLEHGVAPVSWTDYLYLTLGGTLSNAGISGTTFRYGPQITNVHEMDVITGKGDLVTCSSQENSELFHAVLGGLGQFGVIARARIALKPAPKRVKWVRLLYSDFSDFTKDQERLISMDGIRTQHIALDYLEGMLLMHQGPINNWRSSFFPLSEHPRIASLITKHNIIYCLEVAKYYDEQSEKNVNKGIQDLLQGLDYVPEFYYEKDVTFVEFLNRVRSGELKLQSQGLWDVPHPWLNLFIPRSQIMDFNSGVFNDIILKRNITNGPVLVYPMHGSKWDDRMSASIPDEEIFYTIGFLHSSGFDNWKEFDDQNRDILQFCNDAGIKVKQYFPHYNTQEGWANHFGIKWRSFVERKHQFDPRMTLSPGQKIFEYNPNQRFKSLPQ* 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1003 542 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 71 106 IPR006093 GO:0016491
Lan12g1003 542 Gene3D - 53 529 IPR016167 -
Lan12g1003 542 SUPERFAMILY FAD-linked oxidases, C-terminal domain 250 529 IPR016164 GO:0003824|GO:0050660
Lan12g1003 542 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 250 529 IPR015345 GO:0009690|GO:0019139|GO:0050660
Lan12g1003 542 PANTHER GULONOLACTONE OXIDASE 16 529 - -
Lan12g1003 542 Pfam FAD binding domain 71 218 IPR006094 GO:0050660
Lan12g1003 542 PANTHER CYTOKININ DEHYDROGENASE 1, FAD AND CYTOKININ-BINDING PROTEIN 16 529 - -
Lan12g1003 542 Gene3D - 252 488 IPR016170 -
Lan12g1003 542 Gene3D - 122 251 IPR016169 -
Lan12g1003 542 ProSiteProfiles PCMH-type FAD-binding domain profile. 67 249 IPR016166 GO:0071949
Lan12g1003 542 SUPERFAMILY FAD-binding/transporter-associated domain-like 46 248 IPR036318 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1003 Lan-Chr12 16719669 16723461 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1003 K00279 - gmx:100787676 813.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1003 12 16719669 16723461 Lan15g0144 15 1542867 1547243 PCT
Lan12g1003 12 16719669 16723461 Lan14g0134 14 1657303 1661550 PCT
Lan15g0144 15 1542867 1547243 Lan12g1003 12 16719669 16723461 PCT
Lan14g0134 14 1657303 1661550 Lan12g1003 12 16719669 16723461 PCT