Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0880 ATGGGAGTGTCAACCTTTAAACATGAGTATTCTTCCCCTATTGCCCCATCCCGAATCTTCAAGGCCTTGATCATAGATTCCAGAAACTTGCTTCCAAAACTCTTACCACAGTTTGTAAAAGAAATCATTCTAATCCAAGGAGATGGAGAAGCTGGAAGCATTGAACAAATTAACTTCAATGAAGCTAGCCCCTTCAAATATCTGAAACAGAAGATTGTAGTGCTTGATAAGGACAACTTGGTTTGCAAGTACACTTTGATTGAAGGGGATCCATTAGGTGAAAAGTTTGAGTCTATAACTTATAATGTTAAGTTTGAGGACACTAGTAATGGAGGTTGCCTTTGTAAGATGACAAGCATTTACAACACAATTGGTGATTTTGATGTTAAAGAAGAAGAGGTTGAGGAAGGAAGGGAAAGCAACATTGCAATTTACAGAGTTGTTGAGTCTTACCTGCTGGAAAATCCACACCTCTATGCTTAA 483 0.381 MGVSTFKHEYSSPIAPSRIFKALIIDSRNLLPKLLPQFVKEIILIQGDGEAGSIEQINFNEASPFKYLKQKIVVLDKDNLVCKYTLIEGDPLGEKFESITYNVKFEDTSNGGCLCKMTSIYNTIGDFDVKEEEVEEGRESNIAIYRVVESYLLENPHLYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0880 160 CDD Bet_v1-like 5 152 - -
Lan12g0880 160 ProSitePatterns Pathogenesis-related proteins Bet v I family signature. 89 121 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PANTHER PATHOGENESIS-RELATED PROTEIN BET V I FAMILY PROTEIN 1 160 - -
Lan12g0880 160 Pfam Pathogenesis-related protein Bet v 1 family 1 154 IPR000916 GO:0006952
Lan12g0880 160 PANTHER - 1 160 - -
Lan12g0880 160 Gene3D - 1 160 IPR023393 -
Lan12g0880 160 SUPERFAMILY Bet v1-like 3 159 - -
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan12g0880 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0880 Lan-Chr12 15860787 15861892 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0880 - - gmx:100500506 257.684
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0880 12 15860787 15861892 Lan16g0187 16 1471506 1472823 PCT
Lan19g0872 19 16207436 16208538 Lan12g0880 12 15860787 15861892 PCT