Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan19g0872 ATGGCTGTTCTAACATTCACTGATGAGTCCACTAGCATTGTCCAAGCAGAGAGGCTTTTCAAGTCTTTGATCCTTGATGCTCATAACCTCATTCCTAAGCTTCTTCCTCAGGCTATTAAGAAAGTTGAACTTGTTCAAGGCAATGGTGGCCCTGGAAGCATTCAAGAGATAACCATTGTTGAAGGTGATAGCATCAAACACTTGAAGCATAGAATTGATGCACTAGACAAAGAGAATTTGGCATATAGCTACACAGTGATTGAGGGGGATAGTGTATTGGAAAAGGTAGATTCAGTTTCACATGAGATAAAGTTTGAGGCCACTGCAGAAGGAGGTAGCAAGACCAAGAATATAAGCAAGTATCAACCAAAAGAAGGGATTGAGATCAAAGAAGAGGATTTCAAAGCTGCTAGGGAAGAAGCCTCAGCTATACTCAAGGTTGTGGAAGCCTATCTTGTTGCAAACCCTGAGGCCTATGCTTGA 483 0.4182 MAVLTFTDESTSIVQAERLFKSLILDAHNLIPKLLPQAIKKVELVQGNGGPGSIQEITIVEGDSIKHLKHRIDALDKENLAYSYTVIEGDSVLEKVDSVSHEIKFEATAEGGSKTKNISKYQPKEGIEIKEEDFKAAREEASAILKVVEAYLVANPEAYA* 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan19g0872 160 CDD Bet_v1-like 5 152 - -
Lan19g0872 160 SUPERFAMILY Bet v1-like 4 159 - -
Lan19g0872 160 Pfam Pathogenesis-related protein Bet v 1 family 2 154 IPR000916 GO:0006952
Lan19g0872 160 PANTHER - 1 160 - -
Lan19g0872 160 PANTHER PR-10 TYPE PATHOGENESIS-RELATED PROTEIN-RELATED 1 160 - -
Lan19g0872 160 Gene3D - 2 158 IPR023393 -
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 3 23 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 26 36 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 50 59 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 66 85 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 85 98 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 110 126 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
Lan19g0872 160 PRINTS Major pollen allergen Bet V1 signature 144 154 IPR024949 GO:0004864|GO:0009738|GO:0010427|GO:0038023
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan19g0872 Lan-Chr19 16207436 16208538 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan19g0872 - - lang:109329964 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan19g0872 19 16207436 16208538 Lan12g0880 12 15860787 15861892 PCT