Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0463 ATGTCAAGTGGTGGATGCAGCATAGTTTGGTTTAGAAGGGATCTGAGGGTTGAGGATAACCCTGCACTGATGGCAGGAGTGAGAGCAGGATCTGTTGTTGCTGTTTTCATTTGGGCACCTGAAGAAGAAGGTCAATACCAACCTGGAAGGGTTTCAAGGTGGTGGCTTAAGCATAGTTTGGCTTACCTTGATTCATCTTTGAGAAATCTTGGCACTCCTCTTATTACCAAGAGATCCACTGATAGTGTTTCTGCTTTATTAGAGGTTGTTAAGTCCACTGGTGCTACTCAACTTTTCTTTAATCACTTATATGATCCGTTGTCACTTATCAGGGATCACCGATCAAAGGAGGTTCTGACTGCTCATGGCATAACCGTGCGCTCCTTTAATTCGGACTTATTGTATGAACCGTGGGATGTCAATGATGACCATGGCCAACCATTCACAACTTTCGATGCTTTTTGGGAAAGATGCCTTAACATGCCTTATGACCCACAATCACCTTCTCTCCCACCTAAAAGGATTATTCCAGGAGATACATCAAGGTGCCCGGGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGTCGAGCAATGCACTTCTTGCTCGAGCATGGTCACCCGGGTGGAGTAATGCAGACAAGGCTTTGACAACATTTATAAATGGTCCACTGATTGAGTACTCAGAAAATCGCCGGAAGGCTGACAGTGCCACAACCTCATTTCTGTCCCCTCATTTGCATTTTGGTGAGGTGAGTGTCAAGAAAGTTTTCCATCTTGTTCGGATCAAGCAAGTGCTTTGGGCCAATGAAGGAAATAAGGCTGGTGAAGAAAGTGTTAACTTGTTTCTCAAGTCTATTGGGCTTAGAGAGTATTCAAGGTATATCAGTTTCAACCATCCATATAGTCATGAAAGGCCTCTTCTAGGGCACCTCAAGTTTTTTCCTTGGATGGTGAATGAAGGCTATTTTAAGGCGTGGAGACAAGGAAGAACAGGTTACCCATTGGTGGATGCTGGCATGAGAGAGTTGTGGGCCACTGGTTGGCTTCATGATCGGATACGTGTTGTAGTTTCTAGTTTCTTTGTAAAGGTTCTACAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTGTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATAACTGGTACTCTACCTGATGGTCGCGAATTTGACCGAATTGATAATCCGCAGTTCGAGGGATACAGATTTGACCCCAACGGAGAATATGTAAGACGCTGGCTTCCTGAGCTTTCCAGATTACCAACTCAATGGATACATCATCCATGGAATGCGCCAGAATCTGTAATCCAAGCTGCTGGTATTGAACTTGGATCAAACTACCCTCTTCCAATTGTGGGAATAGATGAAGCAAAAGCAAGACTGCAACAAGCACTTCTACAAATGTGGCAACAAGAAGCAGCTTATAGAGCTGCAACTGAAAATGGGACAGAGGAAGGGCTTGGAGATTCCTTTGAGTCAACCCCTATTGCTTTTCCCGATGACATACAAATGGAGGAAAGACATGAACCTGTTAGGAACAATCCTCCTGCTGCTGCAGCTACTCGGCGCTATGAGGATCAGATGGTCCCGAGCATCACTTCTTCCTTGGTGAGAGTGGAAGAGGAAGAAACTTCTTTGGATGTTCAAAACTCGGCAGAAGAGAGCAGAGCTGAAGTTCCAGTGAATGTGATTGCACAACAAAATGCAAGAGAGACAGTGTTGCGCACTGCTACCAGGAACACTCAACTACCGCATAACAATAATACAATGTGGTTGAGAAATGCAGCCGAAGATTCTACTGCCGAATCTTCAAGTAGTACTAGGAGAGAAAGGGGTGGAGGAGAAGTTCCGGTGTGGTCTCCCACAGCGTCTCACCAATTGATGAATTGGACAAGGTTACCTCAGACTGGGTAA 1962 0.4501 MSSGGCSIVWFRRDLRVEDNPALMAGVRAGSVVAVFIWAPEEEGQYQPGRVSRWWLKHSLAYLDSSLRNLGTPLITKRSTDSVSALLEVVKSTGATQLFFNHLYDPLSLIRDHRSKEVLTAHGITVRSFNSDLLYEPWDVNDDHGQPFTTFDAFWERCLNMPYDPQSPSLPPKRIIPGDTSRCPGDTLVFEDESEKSSNALLARAWSPGWSNADKALTTFINGPLIEYSENRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWMVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYRFDPNGEYVRRWLPELSRLPTQWIHHPWNAPESVIQAAGIELGSNYPLPIVGIDEAKARLQQALLQMWQQEAAYRAATENGTEEGLGDSFESTPIAFPDDIQMEERHEPVRNNPPAAAATRRYEDQMVPSITSSLVRVEEEETSLDVQNSAEESRAEVPVNVIAQQNARETVLRTATRNTQLPHNNNTMWLRNAAEDSTAESSSSTRRERGGGEVPVWSPTASHQLMNWTRLPQTG* 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0463 653 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Lan11g0463 653 Pfam DNA photolyase 7 162 IPR006050 -
Lan11g0463 653 Gene3D HUPs 8 206 IPR014729 -
Lan11g0463 653 MobiDBLite consensus disorder prediction 638 653 - -
Lan11g0463 653 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Lan11g0463 653 Coils Coil 470 490 - -
Lan11g0463 653 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Lan11g0463 653 PANTHER CRYPTOCHROME-1 1 601 - -
Lan11g0463 653 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 488 IPR036134 -
Lan11g0463 653 Gene3D - 134 293 - -
Lan11g0463 653 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 177 IPR036155 -
Lan11g0463 653 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Lan11g0463 653 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Lan11g0463 653 PRINTS DNA photolyase signature 143 159 IPR002081 -
Lan11g0463 653 PRINTS DNA photolyase signature 332 348 IPR002081 -
Lan11g0463 653 PRINTS DNA photolyase signature 352 370 IPR002081 -
Lan11g0463 653 PRINTS DNA photolyase signature 391 405 IPR002081 -
Lan11g0463 653 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Lan11g0463 653 Pfam Blue/Ultraviolet sensing protein C terminal 511 624 IPR020978 -
Lan11g0463 653 PANTHER CRYPTOCHROME 1 601 IPR002081 -
Lan11g0463 653 MobiDBLite consensus disorder prediction 607 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0463 Lan-Chr11 3484841 3489464 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan11g0463 K12118 - gmx:100786551 1142.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan2g0924 2 19994022 19998472 Lan11g0463 11 3484841 3489464 LSH
Lan11g0463 11 3484841 3489464 Lan14g0655 14 13521385 13525699 PCT
Lan14g0655 14 13521385 13525699 Lan11g0463 11 3484841 3489464 PCT