Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0134 ATGAGAACCTTTCTTCTTCTTTCTCTCACAACCCTTCTTCTCTTTTCTTCATTCTCTCTCATTTCCTCCACCGTCACCGTCGACGACGACGGCGAAGATCTCAGCTTCCTTGAAGACTCCGATGAAACCACCACTTCCGACCACCACCATCACTATGACTACCCCGATCCCGAGAACTTCCAAGACTACGAATCAGATCTCGGAGACTTCGATCACGACGAGTACAATTTACCCGAGATCGACGACAAGGACGTCGTCGTTTTGAAGAACAATAACTTCAGCGACTTCGTTAACAGTAACCGTTTCGTTTTAGTTGAATTCTATGCGCCTTGGTGCGGTCACTGTCAGGAACTGGCTCCTCAATATGCTGAAGCTGCGACTCAATTGAAGGGCGAAAATGTCATTTTGGCGAAGGTTGATGCTACTGAAGAAAGTGAATTGGGAAATCAGTATGAAATTGAGGGATTCCCTACTCTCTATTTCTTCGTTGATGGAGTTCATAAACCTTACAAAGGCCTCAGGACTAAGGATGCTATTGTGAGTTGGATTAAGAAGAAGACAGGACCTGGTATTTACAACATAACTAGTTTGGATGATGCTGAACGCATTTTGACATCTGAGTCCAAAGTTGTGTTGGGCTTTATCAACTCTTTAGTTGGCCCTGAGAGTGATGAGCTAGCTGCCGCTTCAAGACTTGAAGATGATGTCAATTTTTATCAAACTGTGAATCCTGATGTGGCGAAGCTTTTCCATATTGACCCCAATGTTAAACGCCCAGCTTTGGTCCTGATCAAAAAAGAGGATGAAAAACTCAACCATTTTGATGGCCAGTTTGCAAAGTCTGAAATAGAAAACTTTGTGACAACCAACAAGCTTCCTTTGGTAACAGTTTTTACAATGGAAGGTGCTCCAGAAATATTTGAAAATCCAACCAAGTACCAGTTGTTGCTCTTTGCTACTTCAAATGATTCAGAGAAGTTGATCCCAGTATTTCGAGAAGCAGCAAAATCTTTCAAGGGGAAGCTGATCTTTGTATATGTGGAATCGGACAATGAAGAAGTTGGAAAGCCCGTTTCAGAGTACTTTGGTATCGGTGGGGATGCTCCAAAAGTACTTGCATACACTGGAAATGAAGATGGAAAAAAATTTGTTCTTGATGACGAGGTGACTTTTGACAACATAAAGGTATTTGGGGAAAATTTCCTTGAAGGCAAGCTAAAGCCCTACTTGAAGTCAGATCCAGTTCCTGAAAGTGATGATGGTGATGTGAAAATAGTTGTTGGGAGTAACTTTGATGAAATTGTCTTGGATGAGTCAAAGGATGTTCTCCTCGAGATTTACGCTCCCTGGTGTGGACATTGCCAAGCACTGGAACCAATATACAACAAGCTTGCAAAACATCTTAGCAGTATTGAGTCTATTGTAATAGCCAAAATGGATGGAACAACAAACGAACATCCAAGGGCAAAGGCTGATGGATTCCCCACTCTTCTATTCTTCCCAGCAGGAGACAAGAGTTTCGGCCCTATTACCGTTGATACAGATCGAACAGTGGTAGCCCTTTATAAGTTCCTGAAGAAAAATGCATCAATCCCTTTCAAGCTCCAGAAACCAACCTCAACCTCTAAACCCCAAAGTTCTGATGCCAAGGAGAGTGGTGATTCTAAGGATGAACTGTTAGTTAAGTAA 1689 0.4239 MRTFLLLSLTTLLLFSSFSLISSTVTVDDDGEDLSFLEDSDETTTSDHHHHYDYPDPENFQDYESDLGDFDHDEYNLPEIDDKDVVVLKNNNFSDFVNSNRFVLVEFYAPWCGHCQELAPQYAEAATQLKGENVILAKVDATEESELGNQYEIEGFPTLYFFVDGVHKPYKGLRTKDAIVSWIKKKTGPGIYNITSLDDAERILTSESKVVLGFINSLVGPESDELAAASRLEDDVNFYQTVNPDVAKLFHIDPNVKRPALVLIKKEDEKLNHFDGQFAKSEIENFVTTNKLPLVTVFTMEGAPEIFENPTKYQLLLFATSNDSEKLIPVFREAAKSFKGKLIFVYVESDNEEVGKPVSEYFGIGGDAPKVLAYTGNEDGKKFVLDDEVTFDNIKVFGENFLEGKLKPYLKSDPVPESDDGDVKIVVGSNFDEIVLDESKDVLLEIYAPWCGHCQALEPIYNKLAKHLSSIESIVIAKMDGTTNEHPRAKADGFPTLLFFPAGDKSFGPITVDTDRTVVALYKFLKKNASIPFKLQKPTSTSKPQSSDAKESGDSKDELLVK* 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0134 562 Pfam Thioredoxin-like domain 227 397 - -
Lan10g0134 562 PRINTS Thioredoxin family signature 103 111 - -
Lan10g0134 562 PRINTS Thioredoxin family signature 111 120 - -
Lan10g0134 562 PRINTS Thioredoxin family signature 152 163 - -
Lan10g0134 562 SUPERFAMILY Thioredoxin-like 419 530 IPR036249 -
Lan10g0134 562 SUPERFAMILY Thioredoxin-like 192 301 IPR036249 -
Lan10g0134 562 TIGRFAM ER_PDI_fam: protein disulfide isomerase 83 559 IPR005792 GO:0003756
Lan10g0134 562 CDD PDI_a_PDI_a'_C 423 525 - -
Lan10g0134 562 SUPERFAMILY Thioredoxin-like 77 188 IPR036249 -
Lan10g0134 562 Pfam Thioredoxin 85 185 IPR013766 -
Lan10g0134 562 Pfam Thioredoxin 423 506 IPR013766 -
Lan10g0134 562 CDD PDI_a_family 86 183 - -
Lan10g0134 562 Gene3D Glutaredoxin 73 187 - -
Lan10g0134 562 SUPERFAMILY Thioredoxin-like 289 420 IPR036249 -
Lan10g0134 562 MobiDBLite consensus disorder prediction 36 56 - -
Lan10g0134 562 ProSiteProfiles Thioredoxin domain profile. 65 188 IPR013766 -
Lan10g0134 562 ProSitePatterns Thioredoxin family active site. 104 122 IPR017937 -
Lan10g0134 562 CDD PDI_b'_family 305 402 - -
Lan10g0134 562 MobiDBLite consensus disorder prediction 41 56 - -
Lan10g0134 562 MobiDBLite consensus disorder prediction 535 562 - -
Lan10g0134 562 Gene3D Glutaredoxin 417 531 - -
Lan10g0134 562 TIGRFAM pdi_dom: protein disulfide-isomerase domain 89 186 IPR005788 GO:0003756
Lan10g0134 562 ProSitePatterns Thioredoxin family active site. 443 461 IPR017937 -
Lan10g0134 562 Gene3D Glutaredoxin 188 291 - -
Lan10g0134 562 PANTHER PROTEIN DISULFIDE-ISOMERASE 3 548 - -
Lan10g0134 562 CDD PDI_b_family 191 290 - -
Lan10g0134 562 ProSiteProfiles Thioredoxin domain profile. 401 530 IPR013766 -
Lan10g0134 562 Gene3D Glutaredoxin 292 416 - -
Lan10g0134 562 PANTHER PROTEIN DISULFIDE ISOMERASE 3 548 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0134 Lan-Chr10 827682 832365 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0134 K09580 - gmx:100170706 831.247
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1940 6 30371096 30375090 Lan10g0134 10 827682 832365 LSH
Lan10g0134 10 827682 832365 Lan7g0298 7 1914193 1918713 PCT
Lan7g0298 7 1914193 1918713 Lan10g0134 10 827682 832365 PCT