Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0860 ATGACGGATGGCTTCTGGAACCACCACCAGCCACCGCAGCACCAGCCACCGCAGCACCAGCCACCGCAGCACCAGCCGCCCCTTCTTCCCCATTCCGGCATTCTCAAAAGACCCCGTATCGAATTCGACCAGCTTTTTCCAGATATTTCTGCTTCTGCCATGTCTTCAGGTAATGAGATGCATAATTATATTGCTCGCAATGATGACCATACTAGTCACCAAATGTTAAATGACGCACAAACAATTGGATCTGCTTATGATCGCTATCTTCAGAGTGGGCAACCTTCTTCGCTTCCTTCTGGGGAAACTAGTACAACTAGTGCTCTTGGATTGGGGAGGGGTGGTGGTCGATTTCCAGGCTATTCACTAGCTGATCCTTCAGTCATGGGGCGTCATGGAGGTGATGGTCGTGATCTTACACCTAATGGAAGAGGTGTTAATTATGGCGGTCAGCTACCAGTTGATGCAGTTTACAGGCCTGGACCTGAGACAGTACCTCTACCTCCAGATGCTTCAAGTACTTTATATGTTGAAGGTCTCCCTTCCGACTGCACAAAAAGAGAAGTGGCACATATTTTTCGCCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAAGAATCCAAACATCGTGGTGGAGATCCTCTGATCCTTTGTTTTGTGGACTTTGGAAATCCAGCTTGTGCAGCAACTGCTATGAGTGCCTTGCAAGGTTATAAAGTCGATGAACTCCATCCCGAGTCCAGTTACTTGCGGCTTCAGTTTTCTCGGTATCCTGGTCCAAGACCTGGATCTGGCCCTGGCCCTGGATCTCGTGGTAAGAGGTAA 831 0.4862 MTDGFWNHHQPPQHQPPQHQPPQHQPPLLPHSGILKRPRIEFDQLFPDISASAMSSGNEMHNYIARNDDHTSHQMLNDAQTIGSAYDRYLQSGQPSSLPSGETSTTSALGLGRGGGRFPGYSLADPSVMGRHGGDGRDLTPNGRGVNYGGQLPVDAVYRPGPETVPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVSKESKHRGGDPLILCFVDFGNPACAATAMSALQGYKVDELHPESSYLRLQFSRYPGPRPGSGPGPGSRGKR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0860 276 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 243 IPR000504 GO:0003723
Lal1g0860 276 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 259 IPR000504 GO:0003723
Lal1g0860 276 MobiDBLite consensus disorder prediction 256 276 - -
Lal1g0860 276 SMART rrm1_1 174 248 IPR000504 GO:0003723
Lal1g0860 276 SUPERFAMILY RNA-binding domain, RBD 149 272 IPR035979 GO:0003676
Lal1g0860 276 CDD RRM_RBPMS_like 173 255 - -
Lal1g0860 276 Gene3D - 169 259 IPR012677 -
Lal1g0860 276 PANTHER RNA-BINDING PROTEIN 2 22 276 - -
Lal1g0860 276 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 22 276 - -
Lal1g0860 276 MobiDBLite consensus disorder prediction 1 33 - -
Lal1g0860 276 MobiDBLite consensus disorder prediction 14 28 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0860 Lal-Chr1 6041237 6047488 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0860 - - gmx:100813445 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0973 2 6550063 6556940 Lal1g0860 1 6041237 6047488 LSH
Lal1g0860 1 6041237 6047488 Lal9g0855 9 6298979 6304638 LSH