Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0973 GGTCTTACTCTTCGTAGATTGTGCCCCTTCAAGTATTGTCAAGTCCTGAGACAGCACAAGCAAGCGCGCCAGCCACCTAGGGTTTCTGCCGTTCCCAAATCTTCCTCAATCATGACGGATGGCTTCTGGAACCACCGCCACCTTCAGCCGCCACATCAGCCGCCGCAGCAGCCACCCCTTCTTCCCCATTCCTCCATGCTTAAACGACCCCGTTCTGATTACGATATTTCTGCTTCTGGCTTGCCTTCAGGTAATGAGATGCATAATTATATTGCTCAAGATGGTGATCGTACTGGTCAGCGAATGTTAAAGGACACACAAACAACTGGGCCTGCTTATGATTTCTATCTTCAGAGTGGGCAACTTTCTTCATATACTTCTGGGGAAGCTAGTACAATTAGTGCTCTTGGATTAGGAAGGGGTGCTGGTGGATTTCCTGGTCATTCATTTGTTGATCCTTCAGTCATGGGGCATCATGGAGGTGGTGGCCCTGATCTTATACCAAATGGAAGGGGCGTTAATTATGGTGGCCCGTTACCAGTTGATGCAGTTCCCAGGCCTAGACATGAGACAATACCTCTACCTCCAGATGCTTCAAGTACTTTATATGTTGAAGGTCTCCCTTCCGACTGCACAAAGAGAGAAGTAGCACATATTTTCCGCCCTTTTGTTGGATATAGAGAAGTGAGACTTGTGAGCAAGGAATCCAAACATCGTGGTGGAGATCCTCTGATCCTTTGTTTTGTGGACTTCGAAAATCCAGCCTGTGCAGCAACAGCTATGAGTGCCTTGCAAGGATATAAGGTCGATGAATTCCATCCTGAGTCTAGTCACTTGCGCCTTCAGTTTTCTCGGTATCCAGGTCCAAGATCTGGAGCTGGCCCAAGATCTGGAGGTGGTCCAAGATCTGGATCTAGACCTAGATCTCGTGGTAAGAGGTAA 942 0.4809 GLTLRRLCPFKYCQVLRQHKQARQPPRVSAVPKSSSIMTDGFWNHRHLQPPHQPPQQPPLLPHSSMLKRPRSDYDISASGLPSGNEMHNYIAQDGDRTGQRMLKDTQTTGPAYDFYLQSGQLSSYTSGEASTISALGLGRGAGGFPGHSFVDPSVMGHHGGGGPDLIPNGRGVNYGGPLPVDAVPRPRHETIPLPPDASSTLYVEGLPSDCTKREVAHIFRPFVGYREVRLVSKESKHRGGDPLILCFVDFENPACAATAMSALQGYKVDEFHPESSHLRLQFSRYPGPRSGAGPRSGGGPRSGSRPRSRGKR 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0973 313 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 286 IPR000504 GO:0003723
Lal2g0973 313 CDD RRM_RBPMS_like 200 282 - -
Lal2g0973 313 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 54 297 - -
Lal2g0973 313 Gene3D - 196 286 IPR012677 -
Lal2g0973 313 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 202 270 IPR000504 GO:0003723
Lal2g0973 313 SUPERFAMILY RNA-binding domain, RBD 184 311 IPR035979 GO:0003676
Lal2g0973 313 SMART rrm1_1 201 277 IPR000504 GO:0003723
Lal2g0973 313 MobiDBLite consensus disorder prediction 282 313 - -
Lal2g0973 313 MobiDBLite consensus disorder prediction 41 68 - -
Lal2g0973 313 PANTHER RNA-BINDING PROTEIN 2 54 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0973 Lal-Chr2 6550063 6556940 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0973 - - gmx:100813445 352.443
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0973 2 6550063 6556940 Lal1g0860 1 6041237 6047488 LSH
Lal2g0973 2 6550063 6556940 Lal9g0855 9 6298979 6304638 LSH