Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0388 ATGGCGACTCTCGATTCCGATGTGGCTATGATTCCCGCCGGCGAGCCTTCAAGCAGTGCTGGTCCTTCTTCCAAAAAGCCCAAACGCTTCGAGATCAAGAAGTGGAACGCCGTCTCACTCTGGGCTTGGGACATCGTTGTTGACAACTGCGCTATCTGCCGTAACCATATCATGGATCTCTGCATTGAATGCCAAGCCAACCAGGCTAGTGCCACAAGTGAGGAGTGCACCGTGGCTTGGGGGGTTTGTAACCATGCTTTCCACTTCCATTGCATTAGCCGATGGCTCAAAACCCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATATGGTCACTAG 351 0.5128 MATLDSDVAMIPAGEPSSSAGPSSKKPKRFEIKKWNAVSLWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0388 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Lal9g0388 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Lal9g0388 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Lal9g0388 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 116 IPR013083 -
Lal9g0388 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Lal9g0388 116 MobiDBLite consensus disorder prediction 1 27 - -
Lal9g0388 116 SUPERFAMILY RING/U-box 28 113 - -
Lal9g0388 116 PANTHER RING BOX 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0388 Lal-Chr9 2577118 2578899 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0388 K03868 - gmx:100789570 249.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0491 1 3105169 3107216 Lal9g0388 9 2577118 2578899 LSH
Lal2g0416 2 2496693 2499126 Lal9g0388 9 2577118 2578899 LSH