Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0416 ATGGCGACTCTTGATTCCGACGTGCCTATGGTTCCCGCCGGCGAACCTTCCGGCAACGCAGGCCCTTCTTCCAAAAAACCTAAGCGCTTTGAGATCAAGAAGTGGAACGCCGTCGCTCTCTGGGCTTGGGACATCGTTGTGGATAACTGCGCTATCTGCCGTAACCATATCATGGATCTCTGCATTGAGTGCCAAGCTAACCAGGCTAGTGCCACCAGCGAGGAATGCACTGTGGCTTGGGGGGTTTGTAACCATGCTTTTCATTTCCATTGCATTAGTCGGTGGCTCAAGACCCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAGAAATACGGTCACTAG 351 0.5185 MATLDSDVPMVPAGEPSGNAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0416 116 Pfam RING-H2 zinc finger domain 48 106 IPR024766 GO:0008270
Lal2g0416 116 CDD mRING-H2-C3H2C2D_RBX1 48 109 - -
Lal2g0416 116 SUPERFAMILY RING/U-box 28 113 - -
Lal2g0416 116 ProSiteProfiles Zinc finger RING-type profile. 61 106 IPR001841 -
Lal2g0416 116 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 1 116 - -
Lal2g0416 116 MobiDBLite consensus disorder prediction 1 27 - -
Lal2g0416 116 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 18 116 IPR013083 -
Lal2g0416 116 PANTHER RING BOX 1 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0416 Lal-Chr2 2496693 2499126 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0416 K03868 - gmx:100789570 254.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0491 1 3105169 3107216 Lal2g0416 2 2496693 2499126 LSH
Lal2g0416 2 2496693 2499126 Lal9g0388 9 2577118 2578899 LSH