Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0491 ATTAAACAATCAACACAGGTTCGAGAAAGATCAAGAATGGCGACTCTTGATTCCGATGTGCCTATGGTTCCGGCCGGCGAACCTTCTAGCAGTGCTGGTCCTTCTTCCAAAAAGCCTAAGCGCTTTGAGATCAAGAAATGGAACGCTGTTGCTCTGTGGGCTTGGGACATCGTTGTGGATAACTGCGCTATCTGCCGTAACCATATAATGGATCTATGCATTGAGTGCCAAGCCAACCAGGCTAGCGCCACTAGTGAGGAATGCACTGTTGCTTGGGGGGTTTGTAACCACGCTTTTCACTTCCATTGCATTAGTCGATGGCTGAAGACCCGTCAAGTTTGTCCTCTAGATAACAGTGAGTGGGAGTTTCAAAAATATGGTCACTAG 387 0.4755 IKQSTQVRERSRMATLDSDVPMVPAGEPSSSAGPSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKYGH 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0491 128 MobiDBLite consensus disorder prediction 1 40 - -
Lal1g0491 128 Pfam RING-H2 zinc finger domain 60 118 IPR024766 GO:0008270
Lal1g0491 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RBX1 13 128 - -
Lal1g0491 128 SUPERFAMILY RING/U-box 40 125 - -
Lal1g0491 128 CDD mRING-H2-C3H2C2D_RBX1 60 121 - -
Lal1g0491 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 128 IPR013083 -
Lal1g0491 128 ProSiteProfiles Zinc finger RING-type profile. 73 118 IPR001841 -
Lal1g0491 128 PANTHER RING BOX 13 128 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0491 Lal-Chr1 3105169 3107216 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0491 K03868 - gmx:100789570 254.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0491 1 3105169 3107216 Lal2g0416 2 2496693 2499126 LSH
Lal1g0491 1 3105169 3107216 Lal9g0388 9 2577118 2578899 LSH