Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0331 ATGTATTGTTATTCAGTGAATGTATCTGCCAAGAATGTCATTCTTAAAGAACTAACTAATTCTGATTGGATTTTCAATCTCGATTTTTTCATCGTAGTGGTAATCATGTCAACCATGACAGCTGTGAAGGTTTCTCCCCAATGCATGTTTCAAACTGCAATCCAAAATCGATCCGCTGTTGCAACCATAGTGAAGTGCCCTTCTTCCATTGGGTCTGTGAAGAGTGTTTCCAGATCTTTTGGCTTGAAGTCATCCACTTCATTTCGGGTGACTGCTATGGCTGCTTACAAGGTTAAGCTGATCGGCCCAGATGGAAAAGAGAATGAATTTGAGGCCCCTGACGATACTTACATCTTGGATGCAGCAGAAAATGCTGGAATTGAACTTCCTTATTCGTGCCGCGCTGGGGCATGCTCTACCTGTGCCGGGAAGATTGTTTCCGGTCAGGTGGATCAGTCTGATGGATCATTCCTTGATGACAATCAACTGAAGGATGGGTATCTGCTTACCTGTGTCTCCTATCCAACTTCAGACCTTGTAATTGAAACTCACAAGGAAGAAGCACTATACTAA 573 0.4311 MYCYSVNVSAKNVILKELTNSDWIFNLDFFIVVVIMSTMTAVKVSPQCMFQTAIQNRSAVATIVKCPSSIGSVKSVSRSFGLKSSTSFRVTAMAAYKVKLIGPDGKENEFEAPDDTYILDAAENAGIELPYSCRAGACSTCAGKIVSGQVDQSDGSFLDDNQLKDGYLLTCVSYPTSDLVIETHKEEALY 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0331 190 CDD fer2 98 182 IPR001041 GO:0051536
Lal9g0331 190 Pfam 2Fe-2S iron-sulfur cluster binding domain 103 176 IPR001041 GO:0051536
Lal9g0331 190 ProSiteProfiles 2Fe-2S ferredoxin-type iron-sulfur binding domain profile. 96 187 IPR001041 GO:0051536
Lal9g0331 190 PANTHER FERREDOXIN 39 190 - -
Lal9g0331 190 SUPERFAMILY 2Fe-2S ferredoxin-like 91 189 IPR036010 GO:0051536
Lal9g0331 190 ProSitePatterns 2Fe-2S ferredoxin-type iron-sulfur binding region signature. 133 141 IPR006058 GO:0051537
Lal9g0331 190 Gene3D - 93 190 IPR012675 -
Lal9g0331 190 PANTHER FERREDOXIN 39 190 - -
Lal9g0331 190 TIGRFAM fdx_plant: ferredoxin [2Fe-2S] 94 190 IPR010241 GO:0009055|GO:0022900|GO:0051537
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0331 Lal-Chr9 2212080 2213136 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0331 K02639 - gmx:100785611 259.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0331 9 2212080 2213136 Lal9g0331 9 2212080 2213136 ECH
Lal1g0431 1 2691694 2692158 Lal9g0331 9 2212080 2213136 LSH
Lal2g0351 2 2113800 2114690 Lal9g0331 9 2212080 2213136 LSH