Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0273 ATGAGATCTATGGCGTCTTCCTCAGCCCTCGACGGCAACCCTCCGCTCCCATTCCACTTCTCCGACGATGAAAGGGGAAGCACCTCCGCCACTACTGAAATTGTTCATACAATTCCCCATTCCACAACCTCATCATGGATTCCTCGGAAACGAAACCTCGATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTCTTCATTCTCAGTCATTCTGGAAAACCTATTTATTCTAGGTATGGAGATGAATTCAAGCTTGCAGGGTTTTCAGCAACTTTGCAAGCAATTATTTCCTTTGTGGAAAACGGGGGTGACTCTGTCAAATTGGTGAGAGCTGGAAAGCATCAGGTGGTTTTTCTTGTGAAAGGGCCAATTTATTTAGTCTGCATCAGCTGCACAGAAGAGCCTTATGATTCATTGATGGGGCAGTTGGAACTAATTTATGGTCAGATGCTTGTTATACTAACAAAATCAATAAACAGATATTTTGAGAAGAATCCAAAGTTTGATATGACACCCTTGCTTGGTGGAACAGACATTGTCTTCTCTTCCCTAATCCACTCTTTTAGTTGGAACCCAGGTACATTTATTCATGCCTATACTTGTCTTCCTCTTGCATATGCGACAAGGCAAGTTGCAGGTGCTGTTTTGCAAGATGTTGCTGATTCAGATGTTCTGTTTGCAACACTGATGTGCAGGCACATGGTAATCAGTCTTGTTGGTGCTCAAAAAACTTCCCTTCATCCGGATGATATGCTGCTGCTGGCCAACTTTGTTATGTCATCAGAATCATTTAGGCAAGCGGACACGTACTTGATTTTGCTAACAACTAGTTCAGATGTATTTTATCACCTTAAGGATTGCAGGATTCGTGTTGAAATGGTCCTATTGAAGTCAAATGTCCTTAGTGAAGTTCAGAGATCCTTGCTAGATGGGGGAATGCATGTTGATGATCTGCCACCAGCACCTCTTTCTGGATCATCTCATTTGGTCCATAACAGGCTTCCATCAGATTCCCCTGAAAGATTTAAGGAACCTGATTTGGGCATTGCGGGTCCTGCTGGTTTGTGGCATTTCATTTATCGTAGTATATATCTGGATCAATATGTCTCATCAGAGTTCTCATCATCAATTAACACTCCTCAGCAGCAGAAACGACTGTATAGAGCTTACCAGAAACTTTTTGTATCCATGCATGATAAAGGAATTGGGCCACACAAAACTCAATTCAGGAGAGATGAAAATTTTGTTCTTCTCTGTTGGGTGACACAGGATTTTGAGCTTTATGCTGCTTTTGATCCCCTTGCAGACAAGGCCTCTGCAATAAACACTTGCAACCGCGTTTGTCAATGGGTAAAAGATGTGGAAAATGAAATATTTTTGCTAGGAGGTAGCCCCCTTTCATGGTGA 1419 0.4228 MRSMASSSALDGNPPLPFHFSDDERGSTSATTEIVHTIPHSTTSSWIPRKRNLDEDDASISWRKRKKHFFILSHSGKPIYSRYGDEFKLAGFSATLQAIISFVENGGDSVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYDSLMGQLELIYGQMLVILTKSINRYFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPGTFIHAYTCLPLAYATRQVAGAVLQDVADSDVLFATLMCRHMVISLVGAQKTSLHPDDMLLLANFVMSSESFRQADTYLILLTTSSDVFYHLKDCRIRVEMVLLKSNVLSEVQRSLLDGGMHVDDLPPAPLSGSSHLVHNRLPSDSPERFKEPDLGIAGPAGLWHFIYRSIYLDQYVSSEFSSSINTPQQQKRLYRAYQKLFVSMHDKGIGPHKTQFRRDENFVLLCWVTQDFELYAAFDPLADKASAINTCNRVCQWVKDVENEIFLLGGSPLSW 472
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0273 472 MobiDBLite consensus disorder prediction 1 30 - -
Lal9g0273 472 Pfam Third Longin domain of FUZ, MON1 and HPS1 358 458 IPR043970 GO:0016192
Lal9g0273 472 Pfam First Longin domain of FUZ, MON1 and HPS1 67 187 IPR043972 GO:0016192
Lal9g0273 472 Pfam Second Longin domain of FUZ, MON1 and HPS1 227 299 IPR043971 GO:0016192
Lal9g0273 472 PANTHER BNAC04G15860D PROTEIN 270 472 - -
Lal9g0273 472 PANTHER BNAC04G15860D PROTEIN 34 270 - -
Lal9g0273 472 PANTHER SAND PROTEIN-RELATED 270 472 IPR004353 GO:0006623
Lal9g0273 472 PANTHER SAND PROTEIN-RELATED 34 270 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 67 84 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 85 105 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 119 133 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 170 182 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 199 220 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 247 263 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 421 435 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 437 450 IPR004353 GO:0006623
Lal9g0273 472 PRINTS Saccharomyces cerevisiae 73.5kDa hypothetical protein signature 450 470 IPR004353 GO:0006623
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0273 Lal-Chr9 1683459 1689187 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0273 K20195 - gmx:100816794 758.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0273 9 1683459 1689187 Lal9g0273 9 1683459 1689187 ECH
Lal25g0184 25 1191721 1196236 Lal9g0273 9 1683459 1689187 PCT
Lal10g1231 10 18636114 18654281 Lal9g0273 9 1683459 1689187 PCT
Lal9g0273 9 1683459 1689187 Lal25g0184 25 1191721 1196236 PCT
Lal9g0273 9 1683459 1689187 Lal10g1231 10 18636114 18654281 PCT