LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lal25g0184	ATGTCATCCCAATCTGACTCCGATCAATTCCATCTTCCCGCACTAACACTAAGCCTCTTCGATGCCGAAGAAGATTCTTCAAATCATGATCCAAACGGCGTCGTTCATGGATCTTCTTCTAATCCTTCTCAACCCTCCGATGATGTCTCAATCCCTGCGCAAACGCCTTCATCTCAACCCTCCACTCCAAGTAGTAGCGGTTATGTCGCTGAAATTGAAGATCTTCCTCTTCACAATGAAATTCAGGACTTAAGTATCCACAGTGATCATCATCAATTTCATAATGAGGATGATGCTTCCATTTCATGGAGGAAAAGGAAGAAGCATTTTTTTGTTCTAAGTCATTCTGGCAAACCAATATATTCTAGGTATGGAGATGAACACAAGCTTGCTGGGTTTTCAGCAACTTTGCAAGCAATTATTTCCTTTGTGGAGAATGGGGGTGACCGTGTCAAATTGGTGAGAGCTGGGAAGCATCAGGTGGTTTTTCTTGTGAAAGGACCAATTTACTTAGTCTGCATCAGCTGCACAGAAGAACCTTATGAGTCATTAGTGGAGCAGTTGGAGCTTATCTATGGCCAGATGATTGTTATACTAACAAAGGCAGTGAACAAATGTTTTGAGAAGAATCCGAAATTTGATATGACACCCTTGCTTGGTGGAACAGATATTGTCTTCTCTTCACTAATCCACTCTTTTAGTTGGAATCCAGCTACATTTCTTCATGCCTACACTTGTATTCCTCTTGCATATGCAACAAGGCAGGCTGCTGATGCTATCTTGCAAGACGTTGCTGATTCAGGTGTTCTGTTTGCAATACTGATGTGCAGGCACAAGGTAATCAGTCTAGGTGGTGCTCAGAAAGCCACTCTTCACCCAGACGATATGCTGCTGCTGGCCAACTTTGTTATGTCATCAGAATCTTTTAGGCAATTATTTAAACTTGTCCCATTGTTATTGATCCTACAAGCAGCAAAAAGTTTAGATTCCATGCAGACATCAGAATCATTTTCTCCTGTTTGCTTGCCAAGATACAATTCTTTGGCATTTATGTATGCCTATATCCATTATTTTGATGCTGACACATACTTAATGTTGCTGACCACTAGTTCAGATGCATTTTACCATCTTAAGGATTGCAGGATTCATATTGAAACGGTCCTTTTGAAGTCAAATGTCCTTAGTGAAGTTCAAAGATCCTTGCTTGACGGTGGAATGCGTGTTGAGGATCTGCCACCCCTACCTCGTTCTGGATCATCTTCTGAATTGGGCCAGAACAGGCTTCAGTTGGATTCTCCTGACAGATTGAGAGAACCTAATTCTGGCATCGGTGGTGATGCTGGGTTGTGGCATTTCATATATCGCAGTATATATCTGGATCAATATGTATCTTCAGAATTCTCATCACCGATTAACACTCCTCAGCAGCAGAAAAGGCTGTACAGAGCTTACCAGAAACTTTTCGTGTCAGTGCATGATAAAGGAATTGGGCCACACAAAACTCAGTTTAGAAGGGATGAAAACTATGTTCTTCTTTGTTGGGTGACACAGGATTTTGAGCTCTATGCTGCATTTGATCCCCTTGCTGACAAGGCCTCGGCAATAAAAACTTGCAACCGAGTGTGTCAATGGGTGAAAGATGTGGAAAATGAAGTATTCTTGATAGGAGCTACCCCTTTTTCATGGTGA	1689	0.4186	MSSQSDSDQFHLPALTLSLFDAEEDSSNHDPNGVVHGSSSNPSQPSDDVSIPAQTPSSQPSTPSSSGYVAEIEDLPLHNEIQDLSIHSDHHQFHNEDDASISWRKRKKHFFVLSHSGKPIYSRYGDEHKLAGFSATLQAIISFVENGGDRVKLVRAGKHQVVFLVKGPIYLVCISCTEEPYESLVEQLELIYGQMIVILTKAVNKCFEKNPKFDMTPLLGGTDIVFSSLIHSFSWNPATFLHAYTCIPLAYATRQAADAILQDVADSGVLFAILMCRHKVISLGGAQKATLHPDDMLLLANFVMSSESFRQLFKLVPLLLILQAAKSLDSMQTSESFSPVCLPRYNSLAFMYAYIHYFDADTYLMLLTTSSDAFYHLKDCRIHIETVLLKSNVLSEVQRSLLDGGMRVEDLPPLPRSGSSSELGQNRLQLDSPDRLREPNSGIGGDAGLWHFIYRSIYLDQYVSSEFSSPINTPQQQKRLYRAYQKLFVSVHDKGIGPHKTQFRRDENYVLLCWVTQDFELYAAFDPLADKASAIKTCNRVCQWVKDVENEVFLIGATPFSW	562

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	108	125	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	126	146	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	160	174	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	211	223	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	335	358	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	363	389	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	511	525	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	527	540	IPR004353	GO:0006623
	Lal25g0184	562	PRINTS	Saccharomyces cerevisiae 73.5kDa hypothetical protein signature	540	560	IPR004353	GO:0006623
	Lal25g0184	562	Pfam	First Longin domain of FUZ, MON1 and HPS1	108	228	IPR043972	GO:0016192
	Lal25g0184	562	MobiDBLite	consensus disorder prediction	408	440	-	-
	Lal25g0184	562	MobiDBLite	consensus disorder prediction	21	67	-	-
	Lal25g0184	562	MobiDBLite	consensus disorder prediction	31	67	-	-
	Lal25g0184	562	Pfam	Second Longin domain of FUZ, MON1 and HPS1	269	381	IPR043971	GO:0016192
	Lal25g0184	562	Pfam	Third Longin domain of FUZ, MON1 and HPS1	448	548	IPR043970	GO:0016192
	Lal25g0184	562	PANTHER	BNAC04G15860D PROTEIN	82	562	-	-
	Lal25g0184	562	PANTHER	SAND PROTEIN-RELATED	82	562	IPR004353	GO:0006623

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lal25g0184	Lal-Chr25	1191721	1196236	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lal25g0184	K20195		-	gmx:100816794	849.736

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lal25g0184	25	1191721	1196236	Lal25g0184	25	1191721	1196236	ECH
	Lal25g0184	25	1191721	1196236	Lal10g1231	10	18636114	18654281	LSH
	Lal25g0184	25	1191721	1196236	Lal9g0273	9	1683459	1689187	PCT
	Lal9g0273	9	1683459	1689187	Lal25g0184	25	1191721	1196236	PCT