Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0196 ATGGAGGCTTTTGTTCTTGTGCTTGTGTTCTTTGTTGTTCTGTGTGGTTATGGTGTGAGTAAAGAGTGTACAAACATTCCAACCCAATCACACACATTCAGGTATGAACTGTTAACATCCAATAATGAAACATGGAAGCAGGAAGTTATGTCTCATTACCATTTGACACCAACTGATGACTCAGCTTGGGAAGATATGCTGCCAAGGAGATTTTCCAAAGAGAATCATCAACATGAGTGGTCAATGATTTATAGGAAAATCAAGAACTTGGGTATGTTCACTCCACCTCAAGGGTTTCTCAAAGAGGTGTCATTGCAAGATGTGAGATTGCAAGAGGGTTCAATACATGCTCAAGCACAGAAGACAAATTTGGAGTATTTGTTAATGTTGGATGTTGATAGGTTGATTTGGAGCTTCAGGAAGAATGCTGATTTACCCACTCCTTCTATACCTTATGGAGGCTGGGAAGGTCCTGAGATTGAACTCAGGGGTCATTTTGTTGGGCATTACTTGAGTGCATCAGCTCTAATGTGGGCCAGCACACAAAGTGTTAGCCTGAAGGAGAAAATGTCAGCTGTTGTTACAGGTCTATCTGCCTGTCAAGAGAAAATTGGAACAGGATATCTCTCTGCATTTCCGTCTCAGTTTTTCGACCGATTTGAAGCTATTCAACCTGTATGGGCTCCCTATTACACCATTCATAAGATCTTAGCCGGCCTGTTGGATCAACATACTATAGCTGGGAACCCTCACGCTCTAAAAATGGTGACATGGATGGTTGATTACTTTTACGACCGAGTGCTGAATGTAATAACACAGTTCAGTATAAATAGACACTATAAATCACTAAATGAGGAAACTGGAGGAATGAATGATGTCCTTTACAGATTATACAGCTTAACGGGAGATACAAAGCATCTAGTGTTGGCTCACCTTTTTGACAAGCCATGCTTTCTAGGGTTGCTTGCAGTCCAGGCTAATGATATAGCTGATTTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGATATGAAGTCACAGGAGATCCACTTTATAAGGAAATTGGGACATTCTTCATGGACCTTATTAACTCTTCTCACAGCTATGCAACTGGAGGCACATCAATTTCTACCCTAATACACATACTTCAATTTTTGAATAGGCTTGATCCAAAGAGAATAGCTGACAACCTAAAAACAACAGAGAATGAAGAGTCATGCACAACTTATAATATGCTGAAGGTTTCACGCCACCTGTTTAGATGGACAAAAGAAGTCTCATATGCAGATTACTATGAGCGTGCCTTAACGAATGGTGTACTCAGCATTCAAAGAGGAACAGATCCTGGAGTGATGATTTATATGCTTCCACTAGGGCGTGGTGTTTCCAAGGCTAGAACTGGACATAGCTGGGGAACACCATTTGACTCTTTCTGGTGCTGTTATGGAACTGGAATTGAATCATTCTCAAAGCTGGGAGATTCTATCTATTTTGAAGAGGGAGGGAATCATCCTGCTCTTTACATCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGAAAAGTTATTCTTAATCAGACAGTAGTTTCAGCTGCTTCATGGGATCCTTACCTACGAGTGACATTTACATTTTTTCCTACTGAGAAAACTGGTTCCTCGTCCACATTGAACTTTCGACTACCATCGTGGACTCATACAAATGGTGCCAAGGGGATATTGAATGGTGAAACTTTATCTCTGCCAGCTCCCAGAAATTTTTTGTCAGTCACACGACAATGGCATGCTGGTGACAAGTTGACTCTTCAGTTGCCTATTACCCTCAGAACAGAGGCCATAAAAGATGATAGGCCTGAATATGCATCCCTTCAAGCAATTCTTTATGGTCCGTATCTTCTTGCGGGTCATACGACCGGTGATTGGGACATTAAAGCTGGGGCTAACCAAGCTATTTCAGAATGGATCACTCCCATTCCTGCCAGCTACAACAGTCAACTAATTTCCTTTTCCCAAGACTTTGCAGAATCAAGTTTTGTTTTAACAAACTCAAACCCATCACTTACTATGCAAAAATTACCTGGACCTGGCACTGATTTGGCCCCTCATGCAACATTTAGACTTATACTAAAAGAACCTTCCACAAAGCACTCAACATTTTCAAATGCTGTTGGTAAATCAGTGGTGTTAGAACCATTTGATCTTCCTGGAATGAATGTGATTCACCAAGGAGCAGATCAACCTCTTGTCATTTCTTCACAAGCTGAGTCATCTTCTATTTTTCTTGTGGTACCAGGATTGGATGGAAGAAATGAAACCATATCTTTAGAATCCCAAAGCAACAATGGTTGCTACATATACAGTAGTATGAGCTTTGGTGCAGAAGTGAAGCTTAGTTGTAAGTATGATTCTGATGCTACTTTTAACCAAGCAGTAAGCTTTTTTGCATGGAAAGGATTAAGACAATATAATCCTATAAGCTTTGTGGCTAAAGGGGAAAACAGAAATTTTCTTTTGGAGCCATTACTCAACTTCAGAGATGAGTACTATACTGTGTATTTCAACATGTAA 2583 0.4022 MEAFVLVLVFFVVLCGYGVSKECTNIPTQSHTFRYELLTSNNETWKQEVMSHYHLTPTDDSAWEDMLPRRFSKENHQHEWSMIYRKIKNLGMFTPPQGFLKEVSLQDVRLQEGSIHAQAQKTNLEYLLMLDVDRLIWSFRKNADLPTPSIPYGGWEGPEIELRGHFVGHYLSASALMWASTQSVSLKEKMSAVVTGLSACQEKIGTGYLSAFPSQFFDRFEAIQPVWAPYYTIHKILAGLLDQHTIAGNPHALKMVTWMVDYFYDRVLNVITQFSINRHYKSLNEETGGMNDVLYRLYSLTGDTKHLVLAHLFDKPCFLGLLAVQANDIADFHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMDLINSSHSYATGGTSISTLIHILQFLNRLDPKRIADNLKTTENEESCTTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTDPGVMIYMLPLGRGVSKARTGHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEGGNHPALYIIQYISSSFNWKSGKVILNQTVVSAASWDPYLRVTFTFFPTEKTGSSSTLNFRLPSWTHTNGAKGILNGETLSLPAPRNFLSVTRQWHAGDKLTLQLPITLRTEAIKDDRPEYASLQAILYGPYLLAGHTTGDWDIKAGANQAISEWITPIPASYNSQLISFSQDFAESSFVLTNSNPSLTMQKLPGPGTDLAPHATFRLILKEPSTKHSTFSNAVGKSVVLEPFDLPGMNVIHQGADQPLVISSQAESSSIFLVVPGLDGRNETISLESQSNNGCYIYSSMSFGAEVKLSCKYDSDATFNQAVSFFAWKGLRQYNPISFVAKGENRNFLLEPLLNFRDEYYTVYFNM 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0196 860 Gene3D - 723 845 - -
Lal9g0196 860 SUPERFAMILY AbfB domain 754 842 IPR036195 GO:0046373|GO:0046556
Lal9g0196 860 Pfam Beta-L-arabinofuranosidase, GH127 107 639 IPR012878 -
Lal9g0196 860 SUPERFAMILY Six-hairpin glycosidases 226 447 IPR008928 GO:0005975
Lal9g0196 860 PANTHER PROLINE-TRNA LIGASE (DUF1680) 7 860 - -
Lal9g0196 860 PANTHER - 7 860 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0196 Lal-Chr9 1230911 1236350 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0196 K09955 - gmx:100781521 1379
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0196 9 1230911 1236350 Lal9g0196 9 1230911 1236350 ECH
Lal1g0295 1 1760882 1766891 Lal9g0196 9 1230911 1236350 LSH
Lal2g0194 2 1153655 1160313 Lal9g0196 9 1230911 1236350 LSH