Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal1g0295 ATGGAGGCTTTTCTGTATCTGCTAGTGTGCTTAGTTCTGTGTGGTTATGCTGTGAGTAAAGAGTGCACAGACATTCCAACCCAATCACACACATTAAGATATGAGTTGTTAACATCAAAGAATGAAACATGGAATCAAGAGGTGATGTCTCATTACCATTTGACACCAACTGATGATTCAGCCTGGGAGGATATGCTACCAAGGAGGTTCTTGAGAGAGGATCATCAACAGGAATGGTCAATGATGTATAGGAAAATCAAGAACTTGGGTGTGTTCAATCCACCTAAAGGGTTTCTAAAAGAGGTGCCTTTGCAGGATGTGAGATTGCAAGAGGGTTCAATTCATGCTCAAGCACAGAAGACAACCTTGGAGTATTTGTTAATGTTCGATGTGGATAGATTGATTTCGAACTTCAGAATAACTGCTGGTCTACCTAATACTTCTACACCTTATGGAGGTTGGGAAGCTGCTGATAATGAGCTCAGGGGTCATTTTGTTGGCCATTACTTGAGCGCATCAGCTCTAATGTGGGCGAGCACACAAAATAACACCCTCAAGGAGAAAATGTCAGCTCTTGTTGCTGGCCTATCTGCCTGTCAAGAGAAAATTGGAACAGGATATCTCTCTGCATTTCCCTCTGAGTTTTTCGATCGATTTGAAGATGTTAAGCGTGTTTGGGCTCCCTATTACACCATTCACAAGATCTTGGCCGGCTTGTTGGATCAACATACTGTAGCTGGAAACCCTCAGGCTCTAAAAATGGTGACATGGATGGTTGATTACTTTTATAACCGTGTGATGAATGTAATAAAACGGTTCAGTATAAATAGACATTATCAATCACTAAATGAGGAAACAGGAGGAATGAATGATCTCCTTTACAGATTATATAGCTTAACTGGAGATCAAAAGCATCTAGTGCTAGCTCACCTTTTTGACAAGCCATGCTTTCTGGGATTGCTTGCAGTCCAGGCTAGTGATATAGCTGATCTTCATGCTAATACACATATCCCAGTTGTTGTTGGATCTCAAATGCGGTATGAAGTCACAGGAGATCCACTTTATAAGGAAATTGGGACATTCTTTATGAACCTTATTAACTCTTCTCACAGCTATGCAACTGGAGGGACATCAGTCAGTGAGTTCTGGCGTGATCCGATGAGAATAGCAGACAACCTAAAAACAACAGAGAATGAAGAGTCATGCTCAACTTATAATATGCTGAAGGTTTCGCGCCACCTCTTTAGATGGACCAAAGAAGTCTCTTATGCAGATTATTACGAGCGTGCCTTAACCAATGGTGTACTCAGCATTCAAAGAGGAACAGAACCTGGAGTGATGATTTATATGCTTCCACTAGGACATGGGGTTTCCAAGGCTAAAAGTACACATAGCTGGGGAACGCCGTTTGACTCTTTCTGGTGCTGCTATGGAACTGGAATCGAATCGTTCTCAAAGCTGGGAGATTCTATATATTTTGAAGAGGAAGGGAAGGATCCTACTCTTTACGTCATTCAGTACATATCAAGCTCATTTAATTGGAAATCTGGAAAAGTTATTCTTAATCAGACAGTTGTTCCAGCTGTTTCATGGGATCCTTATCTAAGAGTGACATTTACATTTTCTCCTACTGAGAAAACTGGTACTTCGTCCACATTGAACTTTCGAAAACCATCTTGGACTCATACAAATAGTGCCAATGGGACATTGAATGGTGAAACTTTATCTCTGCCAGCTCCAGGAAATTTTTTATCAGTCACACGACAGTGGAATGCTGGTGACAAATTGACCCTTCAATTGCCTATTACCCTCAGAACAGAGGCCATAAAAGATGACAGGTCTGAATATGCATCCCTTCAAGCAATTCTTTATGGTCCTTACCTACTTGCCGGTCATACTACCGGTGATTGGGACATTAAAGTTGGGACTAACACAACTATTTCAGAATGGATCACACCCATTCCTGACAGCTACAATAGTCAACTATTTTCTTTTTCTCAATACTATTCAAATTCAACTTTTGTTTTAACAAACTCAAACCAATCACTTACAATGCAAACGCTACCTGCGCCTGGCTCTGATTTGGCTCCTCATGCAACATTTAGACTTATACTAAACGATTCTTCCACGAAGCTTTCAACATTGACAGATACTGTTGGTAAATCAGTGATATTTGAACCATTTGATCTTCCTGGAATGAATGTGATTCACCAAGGACCAGATCAAACTCTTGTCATTTCTTCACAAGTTAAGCCATCTTCTAGTTTTCTTGTGGTACCAGGATTGGATGGAAGAAATAATACCATATCTTTAGAATCCCAAAGCAACAAGGGTTGCTATGTGCACAATGGTGTAACAAGCTCTGGTGCAAAAGTGAAACTCAGTTGCAAGTCTGGTTCTGATGCTACTTTTAACCAAGCAGCAAGCTTTTTTGGATGGAAAGGATTAAGTCAATACAATCCTATCAGCTTTGTGGCTAAAGGGACAAACAGGAGTTTTCTTTTGGAGCCATTACTCACCTTCAGAGATGAGTATTATACTGTGTATTTCAACATTCAACACTAA 2565 0.4043 MEAFLYLLVCLVLCGYAVSKECTDIPTQSHTLRYELLTSKNETWNQEVMSHYHLTPTDDSAWEDMLPRRFLREDHQQEWSMMYRKIKNLGVFNPPKGFLKEVPLQDVRLQEGSIHAQAQKTTLEYLLMFDVDRLISNFRITAGLPNTSTPYGGWEAADNELRGHFVGHYLSASALMWASTQNNTLKEKMSALVAGLSACQEKIGTGYLSAFPSEFFDRFEDVKRVWAPYYTIHKILAGLLDQHTVAGNPQALKMVTWMVDYFYNRVMNVIKRFSINRHYQSLNEETGGMNDLLYRLYSLTGDQKHLVLAHLFDKPCFLGLLAVQASDIADLHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMNLINSSHSYATGGTSVSEFWRDPMRIADNLKTTENEESCSTYNMLKVSRHLFRWTKEVSYADYYERALTNGVLSIQRGTEPGVMIYMLPLGHGVSKAKSTHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGKDPTLYVIQYISSSFNWKSGKVILNQTVVPAVSWDPYLRVTFTFSPTEKTGTSSTLNFRKPSWTHTNSANGTLNGETLSLPAPGNFLSVTRQWNAGDKLTLQLPITLRTEAIKDDRSEYASLQAILYGPYLLAGHTTGDWDIKVGTNTTISEWITPIPDSYNSQLFSFSQYYSNSTFVLTNSNQSLTMQTLPAPGSDLAPHATFRLILNDSSTKLSTLTDTVGKSVIFEPFDLPGMNVIHQGPDQTLVISSQVKPSSSFLVVPGLDGRNNTISLESQSNKGCYVHNGVTSSGAKVKLSCKSGSDATFNQAASFFGWKGLSQYNPISFVAKGTNRSFLLEPLLTFRDEYYTVYFNIQH 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal1g0295 854 PANTHER - 5 853 - -
Lal1g0295 854 Pfam Beta-L-arabinofuranosidase, GH127 106 630 IPR012878 -
Lal1g0295 854 SUPERFAMILY Six-hairpin glycosidases 165 438 IPR008928 GO:0005975
Lal1g0295 854 SUPERFAMILY AbfB domain 729 835 IPR036195 GO:0046373|GO:0046556
Lal1g0295 854 Gene3D - 715 837 - -
Lal1g0295 854 PANTHER PROLINE-TRNA LIGASE (DUF1680) 5 853 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal1g0295 Lal-Chr1 1760882 1766891 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal1g0295 K09955 - gmx:100791803 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0295 1 1760882 1766891 Lal1g0295 1 1760882 1766891 ECH
Lal1g0295 1 1760882 1766891 Lal2g0194 2 1153655 1160313 LSH
Lal1g0295 1 1760882 1766891 Lal9g0196 9 1230911 1236350 LSH