Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal2g0194 ATGAAGGTTTTTCTGTTTGGGCTAGTATCCCTTGTGTTATGTGGTTATGGTTTGAGTAAAGAGTGCACAAACATTCCAACCCAGTCACACACATTACGGTATGAGCTGTTAAAATCAAAGAATGAAACATGGAAGCCAGAGTTGATATCTCATTACCATTTGACACCAAGTGATGATTCAGCCTGGGAAGATATGCTACCAAGGAGGTTCTTGAGAGAGGAACATCAACATGAATGGTCAATGATGTATAGGAAAATTAAGAACTTGGGTGTGTTTAATAATACACCTCAAGGGTTTCTCAAACAGGTGTCTTTGCATGACGTTAGATTGCAAGAGGGTTCAATTCATGCTCAAGCACAGAAGACAAATTTGGAGTATTTGTTAATGTTGGATGTGGATAGGTTGATTTGGAGTTTCAGGAAGACTGCTGGTCTACCTACTCCTTCTACACCTTATGGAGGCTGGGAAGGTGCTGATATTGAACTCAGGGGTCATTTTGTTGGACACTACTTGAGCGCATCGGCTTTAATGTGGGCCAGCACAGGAAATAGTAACCTGCAGGAGAAAATGTCAGCTCTTGTTGCTGGCCTGTCTGCCTGTCAAGAGAAAATTGGAACAGGATATCTCTCTGCATTTCCATCTGAGTTTTTTGATCGATTTGAAGCTGTTAAGCCTGTGTGGGCTCCCTATTACACCATTCACAAGATCTTCGCCGGCTTGTTGGATCAACATGCTGTAGCTGGAAACCCACAGGCTCTAAAAATGGTGACATGGATGGCCGATTACTTTTACAACCGAGTGCAGAATGTTATAACACAGTTCAGTATACATAGACACTATGAATCACAGAATGAGGAAACCGGAGGAATGAATGATGTCCTTTACAGATTATATAGCTTAACAGGAGATCCAAAGCATCTAGAGTTGGCTCACCTTTTTGACAAGCCATGCTTTCTGGGATTGCTCGCAGTCCAGGCTAATGATATTGGTAATTTTCATGCTAATACACATATCCCGATTGTTGTTGGAGCTCAAATGCGGTATGAAGTCACAGGAGATCCACTTTATAAGGAAATTGGGACATTCTTTATGGACATCATTAACTCCTCTCATAGTTACGCAACTGGAGGGACATCAGTCAGCGAGTTCTGGAAAAATCCGAAGAGAATAGCAGACAGCCTAAACACAACAGAAAATGAAGAGTCATGCACAACTTATAATATGCTGAAGGTTTCACGCCACCTGTTTAGATGGACCAAAGAAGCCTCTTATGCAGATTATTATGAGCGCGCCTTAACAAATGGTGTACTCAGCATTCAAAGAGGGACAGATCCTGGAGTGATGATTTATATGCTTCCACTAGGACTTGGGGTTTCCAAGGGTAAAACTTATCATAGCTGGGGAACACCGTTTGACTCTTTCTGGTGCTGCTATGGAACTGGAATTGAGTCATTCTCAAAGCTGGGAGATTCTATTTATTTTGAAGAGGAAGGGAACAATCCTAATCTTTATATCATTCAGTACATATCAAGCACATTTAATTGGCAATTTGGGAAACTTATTCTTAATCAGACAGTTGATCCAGCTTCTTCATGGGATCCTTACCTACGAGTGACATTTACATTTTCTCCTATGGAGAATACTGGTACTTCATCCACATTGAACTTTCGAGTGCCATCTTGGACAACAAATGGTGCCACGGGGACATTGAATGCTGAAACTTTATCTGTGCCAGCTCCAGGAAATTTTTTATCAGTTACACGACAGTGGAGTGCTGATGACAAGTTTAGCCTTCAGCTGCCTATTAACCTCACAACAGAGGCCATAAAAGATGACAGGTCTGAATTTGCATCCCTTCAAGCAATTCTTTATGGTCCCTATCTTCTTGCCGGTCATACCAAAAGTGATTGGGACATTGAAGCTGGGACTAACACAAATATTTCAGAATGGATCACACCCATTCCTGCCAGCTACAATAGTCAACTAATTTCCATTTCCCAAAACTCCCCAGAATCAACTTTAGTTTTGACAAATACAAACGATTCACTTACAATGCAGAACGTACCTCAACCTGGCACTGTTTTGGCTCTTCAGGCAACATTTAGACTTAGACTTGAAAAGTCTTCAACAAAGCTTTCTTCATTTACAAATGCTGTTGTTGGTGAATCCGTGATGTTAGAACCATTTGATCTTCCTGGAATGAATGTGATCCACCAAGGAGAAGATAAACCTCTTGTCATTTCTTCAGAAGTTGAGCCATCTTCTGTTTTTCTTGTGGTACTAGGTTTGGATGGAAGCAATGAAACCATATCTTTAGAATCCCAAAGCGACCGTGGTTGCTATGTTTACAGTGATATGAGCTCTGGTGCAATAGTGAAGCTCAGTTGCAAGTCTCATTCTGATGATACTTTTAACAAAGCAACAAGCTTTGTTGCAGGGGAAGGATTGAGACAATATAATCCTATCACCTTTGTGGCTAGAGGGACTAAAAGGCAATTTCTTTTGGAGCCATTATTCAACTTCAGAGATGAGCAGTATACTGTTTATTTCAACATTCACTAG 2562 0.4098 MKVFLFGLVSLVLCGYGLSKECTNIPTQSHTLRYELLKSKNETWKPELISHYHLTPSDDSAWEDMLPRRFLREEHQHEWSMMYRKIKNLGVFNNTPQGFLKQVSLHDVRLQEGSIHAQAQKTNLEYLLMLDVDRLIWSFRKTAGLPTPSTPYGGWEGADIELRGHFVGHYLSASALMWASTGNSNLQEKMSALVAGLSACQEKIGTGYLSAFPSEFFDRFEAVKPVWAPYYTIHKIFAGLLDQHAVAGNPQALKMVTWMADYFYNRVQNVITQFSIHRHYESQNEETGGMNDVLYRLYSLTGDPKHLELAHLFDKPCFLGLLAVQANDIGNFHANTHIPIVVGAQMRYEVTGDPLYKEIGTFFMDIINSSHSYATGGTSVSEFWKNPKRIADSLNTTENEESCTTYNMLKVSRHLFRWTKEASYADYYERALTNGVLSIQRGTDPGVMIYMLPLGLGVSKGKTYHSWGTPFDSFWCCYGTGIESFSKLGDSIYFEEEGNNPNLYIIQYISSTFNWQFGKLILNQTVDPASSWDPYLRVTFTFSPMENTGTSSTLNFRVPSWTTNGATGTLNAETLSVPAPGNFLSVTRQWSADDKFSLQLPINLTTEAIKDDRSEFASLQAILYGPYLLAGHTKSDWDIEAGTNTNISEWITPIPASYNSQLISISQNSPESTLVLTNTNDSLTMQNVPQPGTVLALQATFRLRLEKSSTKLSSFTNAVVGESVMLEPFDLPGMNVIHQGEDKPLVISSEVEPSSVFLVVLGLDGSNETISLESQSDRGCYVYSDMSSGAIVKLSCKSHSDDTFNKATSFVAGEGLRQYNPITFVARGTKRQFLLEPLFNFRDEQYTVYFNIH 853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal2g0194 853 Pfam Beta-L-arabinofuranosidase, GH127 107 630 IPR012878 -
Lal2g0194 853 Gene3D - 713 846 - -
Lal2g0194 853 PANTHER - 9 852 - -
Lal2g0194 853 PANTHER PROLINE-TRNA LIGASE (DUF1680) 9 852 - -
Lal2g0194 853 SUPERFAMILY Six-hairpin glycosidases 164 473 IPR008928 GO:0005975
Lal2g0194 853 SUPERFAMILY AbfB domain 750 835 IPR036195 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal2g0194 Lal-Chr2 1153655 1160313 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal2g0194 K09955 - gmx:100781521 1329.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0194 2 1153655 1160313 Lal2g0194 2 1153655 1160313 ECH
Lal1g0295 1 1760882 1766891 Lal2g0194 2 1153655 1160313 LSH
Lal2g0194 2 1153655 1160313 Lal9g0196 9 1230911 1236350 LSH