Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0231 ATGGAGCTTATTTCAGGTTTACCAGATGACGTAGCCCGAGACTGTCTGATTCGGGTCTCGTACCAGCAGTTTGCGGCGGTAGCCTCCGTCTGCAAAAAGTGGAAGACGGAGATTCACTCGCCGGAGTTTCGCCGGAGGAGACGATCCATCTGCAAAACCCAGAAAATAGTTGTTACTGTTCAATCGAGGATTGAACCGGACAAATGCGGAGCTGGGTTGTTAGTTAAGTCAACTATGAACCCGGTTTACCGGCTCAGTGTCCTCGAACCGGAAACCGGAATCTGGAGCGAGTTACCGGTTCCTCCCGGTTTTGATGGTGGTTTACCCGTTTTCTGTCAGTTAGTTAGTGTTGGATATGATATTGTTGTTATGGGCGGGTGGGACCCAGATTCGTGGAAACCTTCTAATTCAGTTCTTATCTATAATTTCATGTCGGGGACGTGGCGACGTGGGACCAACATTCCTGGTGTGGCCCGCACGTTCTTCGCATGCGCGTCTGATTCAGATCGAACTGTGTACGTGGCAGGTGGACATGACGAGGAAAAGAATGCTCTGAGGTCGGCATATGCATATGACGTGTCATCTGATGTGTGGATACCCATGCCAGATATGACAATGGATCGGGATGAATGCAAAGCTATCTTATATCATAATGATAGTGGTAGTGGTAATAGTCTTTGCATCATCGGTGGTTATTGCACCGAGATGCAAGGGCGATTCGAGAAGAGTGCTGAGGTCTTTGATGTTTCCACATGGAAATGGAGCACAATGATTGATGAGTTCTTAGATGATGCCATGTGTCCAAGAACGTGTGTGAATGGTGGTGGTAGTGAGGGTGATAAGAGAATGTATATGTGCAATGGGAGTGACGTGGTGGCATTGATGGACTCCACGTGGCAAACAGTGGCAAAAGTGCCATGTGAGATACGTAATGTTGCATGTGTTGGAGTGTGGGAAGGGGCAGTGTTGTTGATTGGGTCGAGTGGGTTGGGTAAACCATATATGGGGTTTGTGTTGGATGTGAAGAGTGGTGTTTGGACTAAAATTGTGACACCAGATAACTTCACGGGCCATGTCCAATCTGGTTGCTTTTTGGAAATTTAG 1104 0.4774 MELISGLPDDVARDCLIRVSYQQFAAVASVCKKWKTEIHSPEFRRRRRSICKTQKIVVTVQSRIEPDKCGAGLLVKSTMNPVYRLSVLEPETGIWSELPVPPGFDGGLPVFCQLVSVGYDIVVMGGWDPDSWKPSNSVLIYNFMSGTWRRGTNIPGVARTFFACASDSDRTVYVAGGHDEEKNALRSAYAYDVSSDVWIPMPDMTMDRDECKAILYHNDSGSGNSLCIIGGYCTEMQGRFEKSAEVFDVSTWKWSTMIDEFLDDAMCPRTCVNGGGSEGDKRMYMCNGSDVVALMDSTWQTVAKVPCEIRNVACVGVWEGAVLLIGSSGLGKPYMGFVLDVKSGVWTKIVTPDNFTGHVQSGCFLEI 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0231 367 SUPERFAMILY F-box domain 3 47 IPR036047 GO:0005515
Lal8g0231 367 Pfam Kelch motif 169 204 IPR006652 GO:0005515
Lal8g0231 367 SMART kelc_smart 120 169 IPR006652 GO:0005515
Lal8g0231 367 SMART kelc_smart 171 218 IPR006652 GO:0005515
Lal8g0231 367 Pfam Kelch motif 109 157 - -
Lal8g0231 367 Gene3D - 9 294 IPR015915 GO:0005515
Lal8g0231 367 SMART fbox_2 7 47 IPR001810 GO:0005515
Lal8g0231 367 PANTHER OS02G0208700 PROTEIN 1 367 IPR044595 GO:0080037|GO:2000762
Lal8g0231 367 Pfam F-box domain 4 43 IPR001810 GO:0005515
Lal8g0231 367 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 367 - -
Lal8g0231 367 SUPERFAMILY Kelch motif 81 349 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0231 Lal-Chr8 1549225 1550328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal8g0231 4 207 EF-hand Containing Proteins AT4G39560 27.053 4.94e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0231 - - gmx:100786398 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0231 8 1549225 1550328 Lal8g0231 8 1549225 1550328 ECH
Lal8g0231 8 1549225 1550328 Lal20g1193 20 16401726 16402811 PCT
Lal8g0231 8 1549225 1550328 Lal18g0192 18 1582806 1583891 PCT
Lal20g1193 20 16401726 16402811 Lal8g0231 8 1549225 1550328 PCT
Lal18g0192 18 1582806 1583891 Lal8g0231 8 1549225 1550328 PCT