Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal18g0192 ATGGATCTGATTTTGGGTTTACCGGATGACATAGCCAGAGAGTGTCTAATTCGGATTTCGTACCAGCAGTTCCCGACGGTAGCATCGGTATGCAAAGGGTGGAAGACGGAGATTGAGTCACCGGCTTTTCGCCGTCAACGGCGGAGCACGGGGCATGCCCAGAAAATCCTTATAATGGTTCAAGCACGAGCTGAACCGGAAAAGTATAGAACCGGTTCAACAAAACCCATGTCGAACCTTGTTTACTTTTTAAGCGTATTTGAACCGGAAACGGGTAAATGGACCGAGTTGCCACCACCACCCGGGTTCGAATCCGGTTTACCAATGTTCTGCCAGTTGGCTGGTATCGGACCGGATCTTGTTTTAATTGGCGGTCTGGACCGGGTTTCATGGAAAGCTTCTAATTCGGTTTTTATTTATAACATGTTCACAGCCGAGTGGAGGCGTGGGTCCCACATGCCCGGTGTGGCGCGTAATTTTTTTGGTTGTGTATCTGATTCTCAACGAATAGTGTTTGTGGCGGGTGGTCATGATGATGATAAGAATGCGTTAAAGTCCGTGTTGGCGTATGATGTGATGTCTGACTTATGGGTATCTCTTCCGAACATGGCAACAGAGCGTGATGAGTGCAAGGCCATGTTTCGTCGTGGGAGGCTTCATATTGTTGGTGGTTATCCTACGGAGTCACAAGGGCTTTTTGGGAAAAGTGCAGAGGTATTTGATTTTGCCATGTGGCAATGGAGCACTTTGGAAGGGTTCTTGGATTGTGCCATGTGTCCAAGAACATTAGTTGACGATTATGGTGGTGATAAAGATGAGATAATTTATATATGCCGCCATGGTGAGTTAATGATGACAATGAAAGATTCTGCGCGACAGAAGATAGCCATCCTGCCACCTGAGATATGCCATGTGGCGCATATTAAAGCATTTGATGGAACAATTTTGGTGATTGGATCAAGTGGGTATGGTGAAGAGCATATGAGTTTTGTGTTTGATGTGAAGAGTAATAATGGTTGGAGAAAATTGGACAACCCCTTAGGGTTTAGGGGACATGTCCATACAAGTTTGCTTTTCAAGATATAG 1086 0.4567 MDLILGLPDDIARECLIRISYQQFPTVASVCKGWKTEIESPAFRRQRRSTGHAQKILIMVQARAEPEKYRTGSTKPMSNLVYFLSVFEPETGKWTELPPPPGFESGLPMFCQLAGIGPDLVLIGGLDRVSWKASNSVFIYNMFTAEWRRGSHMPGVARNFFGCVSDSQRIVFVAGGHDDDKNALKSVLAYDVMSDLWVSLPNMATERDECKAMFRRGRLHIVGGYPTESQGLFGKSAEVFDFAMWQWSTLEGFLDCAMCPRTLVDDYGGDKDEIIYICRHGELMMTMKDSARQKIAILPPEICHVAHIKAFDGTILVIGSSGYGEEHMSFVFDVKSNNGWRKLDNPLGFRGHVHTSLLFKI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal18g0192 361 PANTHER OS02G0208700 PROTEIN 1 360 IPR044595 GO:0080037|GO:2000762
Lal18g0192 361 Pfam Kelch motif 114 154 IPR006652 GO:0005515
Lal18g0192 361 Pfam Kelch motif 170 203 IPR006652 GO:0005515
Lal18g0192 361 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 1 360 - -
Lal18g0192 361 SUPERFAMILY Kelch motif 81 345 IPR015915 GO:0005515
Lal18g0192 361 SMART kelc_smart 170 217 IPR006652 GO:0005515
Lal18g0192 361 SMART kelc_smart 119 167 IPR006652 GO:0005515
Lal18g0192 361 SUPERFAMILY F-box domain 1 54 IPR036047 GO:0005515
Lal18g0192 361 Gene3D - 11 283 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal18g0192 Lal-Chr18 1582806 1583891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal18g0192 5 197 Miscellaneous Gene Families AT4G33900 25.000 6.03e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal18g0192 - - gmx:100796602 462.225
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal18g0192 18 1582806 1583891 Lal18g0192 18 1582806 1583891 ECH
Lal20g1193 20 16401726 16402811 Lal18g0192 18 1582806 1583891 LSH
Lal8g0231 8 1549225 1550328 Lal18g0192 18 1582806 1583891 PCT
Lal18g0192 18 1582806 1583891 Lal8g0231 8 1549225 1550328 PCT