Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1193 ATGATGGATCTGATTTCGGGTTTACCTGAAGACATAGCCAGAGAGTGTTTGATTCGGGTTTCGTATCAGCAGTTCCCGGCGGTGGCGTCGGTGTGCAAAGAATGGAAGACGGAGATTGCATCACCGGAATTTCGCCGTCAACGGCGGAGCACAGGGCACAGCCAGAATATCCTTATAATGGTTCAAGCAAGGCCTGAACCGGAAAAGTCTGAAACCGGTTCAACAAAACGCATAAAAAACCCGGTTTACTTTCTGAGTGTATTTGAACCGGAAACCGGAACCTGGACCGAGTTACCACCACTGCCTGGTTTTGAATCCGGTTTACCAATGTTCTGTCAATTAACCGGAGTTGGACCGGATCTTGTTTTAATTGGCGGTCTAGACCCGATGACGTGGAAGGCTTCTAATTCGGTTTTTATTTATAACTTCTTAACAGCTAAGTGGAGACGTGGGACCCACATGCCAGGTCAGCCACGTAATTTCTTTGCTTGCGTGTCAGATTCTCATGGAAGAGTGTTTGTGGCGGGTGGTCATGACAATGAGAAGAACGCACTACGTTCAGTTTTGGAATATGATGTGACATCTGACTTGTGGGTCCCATTACCCGATATGGCAACGGAGCGTGACGAGTGCAAGGCCGTGTTCCACCACGGAAAGTTAAATGTTGTTGGCGGTTATTCTACCGAGGCGCAGGGGCAGTTTGGAAAGAGCGCAGAAGTATTTGATTTTGCCACGTGGCAGTGGACCCTAGTGGATGAGTTTTTGGATTATGCCACGTGTCCGAGGACGTTAGTAGATAATAGTGACGACGATAATGATGATGATAATGTTTATATATGTCGTGAGGGTGAGTTGATGGTGATGGAGGATTCGACATGGCAGAAGATAACCACGGTTCCGAGCGAGATACGACACGTGGCGCATGTTGGAGTGTTCGATGGGGTAGTGTTAGTAATTGGATCTAGTGGGTATGGTGAAGAGCATGAAAGTTTAGTATTTGATGTAAAGAGTAATACTTGGAAGAAATTGGGCAGCCCAGAAGGGTTTAGGGGACATGTTCAAACAGGTTGGAATTTGAAGATTTAG 1086 0.4678 MMDLISGLPEDIARECLIRVSYQQFPAVASVCKEWKTEIASPEFRRQRRSTGHSQNILIMVQARPEPEKSETGSTKRIKNPVYFLSVFEPETGTWTELPPLPGFESGLPMFCQLTGVGPDLVLIGGLDPMTWKASNSVFIYNFLTAKWRRGTHMPGQPRNFFACVSDSHGRVFVAGGHDNEKNALRSVLEYDVTSDLWVPLPDMATERDECKAVFHHGKLNVVGGYSTEAQGQFGKSAEVFDFATWQWTLVDEFLDYATCPRTLVDNSDDDNDDDNVYICREGELMVMEDSTWQKITTVPSEIRHVAHVGVFDGVVLVIGSSGYGEEHESLVFDVKSNTWKKLGSPEGFRGHVQTGWNLKI 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1193 361 PANTHER OS02G0208700 PROTEIN 2 360 IPR044595 GO:0080037|GO:2000762
Lal20g1193 361 Pfam F-box domain 5 41 IPR001810 GO:0005515
Lal20g1193 361 Pfam Kelch motif 211 250 IPR006652 GO:0005515
Lal20g1193 361 Pfam Kelch motif 116 155 IPR006652 GO:0005515
Lal20g1193 361 Pfam Kelch motif 169 204 IPR006652 GO:0005515
Lal20g1193 361 Gene3D - 11 284 IPR015915 GO:0005515
Lal20g1193 361 PANTHER GALACTOSE OXIDASE/KELCH REPEAT PROTEIN 2 360 - -
Lal20g1193 361 SUPERFAMILY Kelch motif 80 349 IPR015915 GO:0005515
Lal20g1193 361 SMART kelc_smart 120 168 IPR006652 GO:0005515
Lal20g1193 361 SMART kelc_smart 171 218 IPR006652 GO:0005515
Lal20g1193 361 SUPERFAMILY F-box domain 2 53 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1193 Lal-Chr20 16401726 16402811 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal20g1193 5 201 EF-hand Containing Proteins AT4G39560 27.136 1.94e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1193 - - gmx:100796602 495.738
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1193 20 16401726 16402811 Lal20g1193 20 16401726 16402811 ECH
Lal20g1193 20 16401726 16402811 Lal18g0192 18 1582806 1583891 LSH
Lal8g0231 8 1549225 1550328 Lal20g1193 20 16401726 16402811 PCT
Lal20g1193 20 16401726 16402811 Lal8g0231 8 1549225 1550328 PCT