Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal8g0228 ATGTCTTCTTCTCTTCCTCCCAAAGAGGCCAACCTCTTCAAACTTATTGTTAAATCCTATGAGACCAAACAATACAAAAAGGGCCTCAAAGCAGCTGATGCCATTTTGAAAAAATTTCCACACCATGGAGAGACTTTATCAATGAAGGGTTTGACATTAAATTGCATGGATCGTAAGTCTGAAGCATACGAACTTGTTCGCCAAGGGCTAAAGAATGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTACCGGTCAGACAGAGAATACAGGGAGGCAATCAAGTGCTACCGAAATGCACTGAGAATAGATCCTGACAATCTAGAAATCTTACCTGGCTTTGTTGAGACACGGCAACAACTTCTGACTCTGAAGTCAAATCATCGCATGAACTGGATTGGCTTTGCTGTTGCACATCATTTAAACTCCAATGCATCAAAGGCAGTGGAAATCCTGGAAGCTTATGAAGGGACATTAGAAGAGGATTTTCCTCCAGAAAATGAGCGGTGTGAGCATGGGGAAATGCTTTTATACAAGATCTCTTTGTTAGAGGAATGCGGATTTCTTGAGAGAGCTCTAGAGGAGTTGCACAAAAAAGAAATAAGAATTGTTGATAAGCTTGATTATAAAGAACAAGAGGTTTCACTTTTAGTAAAGCTTGGTCGCTTTGAAGAAGGCGAGAAATTGTATCGGGAGTTATTGTCCATGAATCCTGACAATTATAGATATTATGAGGGCCTCCAAAAATGTGTTGGATTATATTCAGAAAATGGTCATTTTTCTCCTGATGAAATTGATCGGTTAGATGCCTTGTACACAACACTGCGGGAGCAATTTAAGATGTCTTCGGCTGTCAAGAGAATACCATTAGATTTTTTACAAGATGACAGATTTAGAGAAGCAGCAGATAGTTATATCAGACCTCTCCTGACTAAGGGAGTTCCATCTCTGTTCTCTGATCTTTCTTCTTTGTACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTCGAGTTAGAGAACTCAATTAGGACAACTGGTCAGTACCCTGGGAGGGTTGAAAAGGAGCCTCCTTCAACTCTTATGTGGACTTTGTTCTTGTTGGCTCAGCATTATGACAGGCGGGGCCAATATGAAACTGCTCTTTCTAAAATCAATGAGGCTATAGAACACACACCTACCGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAGCATGCTGGTGATTTGGCTGCTGCTGCTGTATTAGCAGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGCGTTAAGCGCATGCTGCAGGCTGATCAGGTGGTTTTGGCAGAAAAAACTGCTGTGTTGTTCACAAAAGATGGGGATCAGCATAACAATCTCCATGACATGCAGTGCATGTATGAGCTTGCCTCTGCTGAAAGCTATGATCGCCAAGGTGATCTGGGACTAGCTCTCAAGAAATTCCTAGCAGTGGAAAAGCATTATGCAGATATCACTGAAGATCAATTTGATTTTCATTCATACTGTTTAAGGAAAATGACATTGCGCACATATGTGGAAATGCTCAAGTTTCAAGATAGATTGCACTCACATGCTTATTTTCGTAAAGCAGCTGCTGGAGCTATCAGATGTTATATTAAATTGCATGATTCTCCTCCAAAGTCGACGACTGAGGAAGACAATGCAATGTCCAAGTTGCTTCCTTCTCAGAAAAAGAAACTGAGGCAAAAACAGAGAAAGGCAGAAGCAAGAGCTCAGAAAGAGGCAGAAGAAAAAAATGAAGAATCAAGCGCTGGTGGGGTATCAAAGTCTGGGAAACGGCCTACAAAACCTGTTGATCCTGATCCACGTGGAGAAAAGTTGTTGCAGGTTGAAGATCCATTGTCTGAAGCCACAAAATACTTGAAGTTGCTGCAGAAGCATTCACCTGATTCATTGGAGACACATTTGCTCTCTTTTGAATTATATATGAGAAAACAGAAGGTTTTGCTTGCCTTCCAGGCTGTAAAGCAGTTGCTGAGGTTGGATGCTGAACACCCGGATTCTCATCGTTGCCTGATTAAATTCTTCCATAAAGTGGGATCCATGAATGCCCCTGTGACTGACAGTGAGAAACTTATTTGGGGTGTCCTAGAAGCTGAGCGCCAAACTATCAGTCAACTGCATGGGAAATCTCTGTTTGAGGCAAATAACTCTTTCCTCGAAAAACATAAAGATTCTTTGATGCACAGAGCTGCTTTTGGAGAATTGTTGTACATTTTGGATCACAACAGAAAGGCTGAGGCTGTCCAGTTTATTGAAGGGTCAACAAATAACCTTGTGCCAAGAAATGGTGCACTCGGACCAATCAGAGAATGGAAACTTAAAGACTGTATTGCAGTTCATAAACTTCTCGGGACAGTCCTTGTTGATCTGGATGCTGCACTGAGATGGAAAGTGCGCTGTGCAGAGTATTTCTCCTACTCTACATACTTTGACGGCAGCAATAGCTCTGCGTCTCCTAACTCTGTTCTGAATAAGATAAGCAAGAACACTGAAAATGGGAGTGCTAACCATTTGGTGGGTGATCACAATGTGGATTCAATCACATCAAATGGGAAACTAGAGGCATTTAAAGATATCACTATCTCACAAAGTTAA 2673 0.4134 MSSSLPPKEANLFKLIVKSYETKQYKKGLKAADAILKKFPHHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRSDREYREAIKCYRNALRIDPDNLEILPGFVETRQQLLTLKSNHRMNWIGFAVAHHLNSNASKAVEILEAYEGTLEEDFPPENERCEHGEMLLYKISLLEECGFLERALEELHKKEIRIVDKLDYKEQEVSLLVKLGRFEEGEKLYRELLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDRLDALYTTLREQFKMSSAVKRIPLDFLQDDRFREAADSYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELENSIRTTGQYPGRVEKEPPSTLMWTLFLLAQHYDRRGQYETALSKINEAIEHTPTVIDLYSVKSRILKHAGDLAAAAVLADEARCMDLADRYVNSECVKRMLQADQVVLAEKTAVLFTKDGDQHNNLHDMQCMYELASAESYDRQGDLGLALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDRLHSHAYFRKAAAGAIRCYIKLHDSPPKSTTEEDNAMSKLLPSQKKKLRQKQRKAEARAQKEAEEKNEESSAGGVSKSGKRPTKPVDPDPRGEKLLQVEDPLSEATKYLKLLQKHSPDSLETHLLSFELYMRKQKVLLAFQAVKQLLRLDAEHPDSHRCLIKFFHKVGSMNAPVTDSEKLIWGVLEAERQTISQLHGKSLFEANNSFLEKHKDSLMHRAAFGELLYILDHNRKAEAVQFIEGSTNNLVPRNGALGPIREWKLKDCIAVHKLLGTVLVDLDAALRWKVRCAEYFSYSTYFDGSNSSASPNSVLNKISKNTENGSANHLVGDHNVDSITSNGKLEAFKDITISQS 890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal8g0228 890 Gene3D - 491 711 - -
Lal8g0228 890 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 869 - -
Lal8g0228 890 Pfam Tetratricopeptide repeat 80 110 IPR013105 -
Lal8g0228 890 Coils Coil 582 606 - -
Lal8g0228 890 Gene3D - 2 489 - -
Lal8g0228 890 MobiDBLite consensus disorder prediction 561 632 - -
Lal8g0228 890 ProSiteProfiles TPR repeat profile. 367 400 IPR019734 GO:0005515
Lal8g0228 890 MobiDBLite consensus disorder prediction 592 608 - -
Lal8g0228 890 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lal8g0228 890 SUPERFAMILY TPR-like 13 114 IPR011990 GO:0005515
Lal8g0228 890 SUPERFAMILY TPR-like 178 414 IPR011990 GO:0005515
Lal8g0228 890 SUPERFAMILY TPR-like 368 771 IPR011990 GO:0005515
Lal8g0228 890 PIRSF NAT_A 1 804 IPR021183 -
Lal8g0228 890 SMART tpr_5 367 400 IPR019734 GO:0005515
Lal8g0228 890 SMART tpr_5 210 243 IPR019734 GO:0005515
Lal8g0228 890 SMART tpr_5 43 76 IPR019734 GO:0005515
Lal8g0228 890 SMART tpr_5 77 110 IPR019734 GO:0005515
Lal8g0228 890 PANTHER BNAC02G23120D PROTEIN 10 869 - -
Lal8g0228 890 Pfam N-terminal acetyltransferase A, auxiliary subunit 174 682 IPR021183 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal8g0228 Lal-Chr8 1526939 1540345 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal8g0228 K20792 - gmx:100820094 1513.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal8g0228 8 1526939 1540345 Lal8g0228 8 1526939 1540345 ECH
Lal25g0274 25 1884159 1898552 Lal8g0228 8 1526939 1540345 LSH
Lal8g0228 8 1526939 1540345 Lal20g1194 20 16430048 16444039 PCT
Lal20g1194 20 16430048 16444039 Lal8g0228 8 1526939 1540345 PCT