Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal20g1194 ATGGTTGCTTCTCTTCCTCCAAAGGAATCCAATCTCTTCAAGCTTATAGTCAAATCATATGAAACCAAGCAATACAAAAAGGGCCTGAAAGCAGCTGATGCCATTTTGAAAAGATTTCCTGACCATGGAGAAACATTATCAATGAAGGGGTTGACATTAAATTGCATGGATCGTAAATCTGAAGCATATGAACTTGTCCGTCAAGGATTGAAGAACGACCTTAAAAGTCATGTTTGCTGGCATGTTTTTGGTCTCCTTTATCGGGCGGACAGAGAATACAGGGAGGCGATCAAGTGCTACCGAAATGCACTTAAAATAGATCCTGACAATATTGAAATCCTGCGTGACCTTTCACTCTTACAGGCTCAAATGCGAGACTTAACTGGCTTTGTTGAGACAAGACAAAAACTTTTAACTCTGAAGCCAAATCATCGCATGAACTGGATAGGCTTTACTGTTGCCCATCATTTGAACTCTGATCCGTCCAAGGCTGTTGAAATTTTGGAAGCATATGAAGGGACTTTAGAAGATGATAACCCTCCAGAAAATGAACGGTGTGAGCATGGGGAAATGCTTTTATATAAGATCTCTTTGCTAGAGGAATGTGGATTTCTTGAGAGAGCTCTAGAGGAGTTGCACAAAAAAGAGTCAAATATTATTGATAAGGTTTCATATAAAGAACAAGAAGTTTCACTTTTAGTGAAGCTTGGTCGCTTAGAAGAAGGTGAAAGTCTGTACCGGGCATTACTTTCCATGAATCCGGATAATTACAGATACTATGAAGGTCTCCAAAAATGTGTTGGGTTGTATTCAGAAAATGGCCACTTCTCTCCTGATGAGATAGATCGGTTAGATTCCTTGTACAGAACACTTGGGCAGCAATATAGGCGATCTTCTGCTGTTAAGAGAATACCACTAGATTTTCTACAAGGTGACAAATTTCGAGAAGCAGCAGGTAGTTATATAAGGCCTCTCCTCACTAAGGGAGTTCCATCTCTGTTCTCTGATCTTTCTTCTTTGTACAATCACCCTGGGAAGGCAGACATTTTGGAACAACTTATTCTTGAGTTAGAACACTCAATTAAGACGCCAGGCCAATATCCTGGGAGGGTGGAAAAAGAACCCCCTTCAACTCTTCTGTGGACTTTATTTTTATTGGCTCAGCATTATGACAAACGGGGCCAATATGATCTCGCTCTTTCTAAAATTGACGAGGCTATAGAACACACACCTACTGTCATTGATCTATATTCTGTCAAGAGTCGGATACTGAAACATGCTGGTGATTCGACTGCAGCTGCTGCTTTTGCTGATGAAGCTAGGTGTATGGATCTTGCTGATCGTTATGTTAATAGTGAATGTGTTAAGCGCATGCTACAGGCTGATCAGGTGGCCTTGGCAGAGCAAACTGCTGCATTGTTCACAAAAGAAGGTGATCAACACACTAACCTTCATGACATGCAGTGCATGTATGAGCTCGCTTCTGGTGAAAGCTTTCTCCGCCAGGGTGATCTTGGCTGGGCACTAAAGAAATTTTTAGCAGTGGAGAAGCATTATGCAGATATTACTGAAGACCAATTTGATTTTCATTCGTACTGCTTAAGGAAAATGACTTTGCGTACTTATGTGGAAATGCTCAAATTTCAAGACCGATTGCACTCACACATATATTTTCATAAAGCAGCAGCTGGAGCTATCAGGTGTTATATTAACGTGTATGATTCTCCCCCAAAGTCTACAGCAGAGGAAGATAATGATATGTCAAAGTTGCTTCCTTCTCAGAAAAAGAAATTGAGACAAAAACAGAGAAAGGCAGAAGCAAGAGCTAAGAAAGAGGCAGAAGAAAAGAATGAGGAATTAGGTGCCACTGGGGTATCAAAGTCTGGGAAACGGAATGTAAAACCTGTTGATCCTGATCCACACGGGGAGAAGTTGGTGCAGGTTGAAGATCCACTCTTGGAAGCCACAAAATACTTAAAGTTGCTGCAGAAGAGTTCACCCGATTCACTGGAGACACATTTGCTCTCTTTTGAAATATATACAAGAAAACAGAAGATTTTGCTTGCCTTTCAGGCTGTAAAGCAGTTGCTGAGGTTGGATGCTGAGCATCCCGATACTCATCGATGCTTGCTAAAGTTCTTCCATAAAGTGGGATCCATCAATGCTCTTGTGACTGACAGTGAGAAGCTGATTTTTAGTGTCCTAGAAGCTGAGCGCCCAACTATTAGTCAGCTGCATGACAAATCTCTGTTTGAGGCAAATGGCTCTTTCCTTGAAAAGCATAAAGATTCTTTGACGCATAGAGCAGCTTTTGCAGAAATTTTATACATTTTGGATTCAAACAGGAAGTCTGAGGCTGTCAAGTTCATCGAAGGGTCAACAAATAACCTTGTTCCAAGAAATGGAGCACTCGGACCAATCAAGGAGTGGAAACTTAAAGACTGCATTACAGTTCACAAACTTCTTGGAACAGTACTTGTTGAACCAGATGCTGCAGCAAGATGGAAAGTGCGTTGTGCAGAGTACTTCCCTTATTCTACTTACTTTGAAGGCAACCTCAGTTCTGCGTCTCCCAACTCAGTCTTCAACAAGCTACGTAAGAACTCTGAGAATGAGAGTCCTAACCATTCACATGGTCAAAATGTGGACTCCGTCACATCAAATAGGAACATAGCAGCATTTAAAGATCTCACTGTCTAA 2700 0.413 MVASLPPKESNLFKLIVKSYETKQYKKGLKAADAILKRFPDHGETLSMKGLTLNCMDRKSEAYELVRQGLKNDLKSHVCWHVFGLLYRADREYREAIKCYRNALKIDPDNIEILRDLSLLQAQMRDLTGFVETRQKLLTLKPNHRMNWIGFTVAHHLNSDPSKAVEILEAYEGTLEDDNPPENERCEHGEMLLYKISLLEECGFLERALEELHKKESNIIDKVSYKEQEVSLLVKLGRLEEGESLYRALLSMNPDNYRYYEGLQKCVGLYSENGHFSPDEIDRLDSLYRTLGQQYRRSSAVKRIPLDFLQGDKFREAAGSYIRPLLTKGVPSLFSDLSSLYNHPGKADILEQLILELEHSIKTPGQYPGRVEKEPPSTLLWTLFLLAQHYDKRGQYDLALSKIDEAIEHTPTVIDLYSVKSRILKHAGDSTAAAAFADEARCMDLADRYVNSECVKRMLQADQVALAEQTAALFTKEGDQHTNLHDMQCMYELASGESFLRQGDLGWALKKFLAVEKHYADITEDQFDFHSYCLRKMTLRTYVEMLKFQDRLHSHIYFHKAAAGAIRCYINVYDSPPKSTAEEDNDMSKLLPSQKKKLRQKQRKAEARAKKEAEEKNEELGATGVSKSGKRNVKPVDPDPHGEKLVQVEDPLLEATKYLKLLQKSSPDSLETHLLSFEIYTRKQKILLAFQAVKQLLRLDAEHPDTHRCLLKFFHKVGSINALVTDSEKLIFSVLEAERPTISQLHDKSLFEANGSFLEKHKDSLTHRAAFAEILYILDSNRKSEAVKFIEGSTNNLVPRNGALGPIKEWKLKDCITVHKLLGTVLVEPDAAARWKVRCAEYFPYSTYFEGNLSSASPNSVFNKLRKNSENESPNHSHGQNVDSVTSNRNIAAFKDLTV 899
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal20g1194 899 Gene3D - 504 725 - -
Lal20g1194 899 SMART tpr_5 77 110 IPR019734 GO:0005515
Lal20g1194 899 SMART tpr_5 380 413 IPR019734 GO:0005515
Lal20g1194 899 SMART tpr_5 43 76 IPR019734 GO:0005515
Lal20g1194 899 SUPERFAMILY TPR-like 384 719 IPR011990 GO:0005515
Lal20g1194 899 PIRSF NAT_A 1 817 IPR021183 -
Lal20g1194 899 PANTHER N-TERMINAL ACETYLTRANSFERASE-RELATED 10 879 - -
Lal20g1194 899 SUPERFAMILY TPR-like 21 263 IPR011990 GO:0005515
Lal20g1194 899 Pfam TPR repeat 84 123 - -
Lal20g1194 899 ProSiteProfiles TPR repeat profile. 77 110 IPR019734 GO:0005515
Lal20g1194 899 PANTHER BNAC02G23120D PROTEIN 10 879 - -
Lal20g1194 899 MobiDBLite consensus disorder prediction 605 621 - -
Lal20g1194 899 MobiDBLite consensus disorder prediction 865 885 - -
Lal20g1194 899 MobiDBLite consensus disorder prediction 579 643 - -
Lal20g1194 899 Coils Coil 595 623 - -
Lal20g1194 899 Pfam N-terminal acetyltransferase A, auxiliary subunit 187 695 IPR021183 -
Lal20g1194 899 MobiDBLite consensus disorder prediction 579 593 - -
Lal20g1194 899 Gene3D - 2 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal20g1194 Lal-Chr20 16430048 16444039 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal20g1194 K20792 - gmx:100820094 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal20g1194 20 16430048 16444039 Lal20g1194 20 16430048 16444039 ECH
Lal25g0274 25 1884159 1898552 Lal20g1194 20 16430048 16444039 PCT
Lal8g0228 8 1526939 1540345 Lal20g1194 20 16430048 16444039 PCT
Lal20g1194 20 16430048 16444039 Lal25g0274 25 1884159 1898552 PCT
Lal20g1194 20 16430048 16444039 Lal8g0228 8 1526939 1540345 PCT