Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g1017 ATGGAAGAAGTTAACGTGGTGGAAACTAAGGATGGGACTGTTTCAGTAGCTACTGCTTTTGCTGGTCACCAGGAAGGTAATGCTTCTGCGTCGTTCAGCTTTCTTGTTCGGAAACGAATCATCTCCACTACTAGAGACACAAGTTATTTCCCTTTGTTTGTGTATTTAGGGGACAGAGATCACAAATTTTTGAGAAAAGCAGTTGAAGAAGCATATAAAGGGGTAGATTGTGGACATGGAGGCCCTTTTGGTGCTGTAATAGTTCACAATGATGAAATAGTTGCTAGTTCTCACAACATGGTTCTTAGTTACACAGACCCAACTGCTCATGCAGAGGTGACAGCTATACGCGAGTTCCGTGATTCCATCTATGCCGGAAAAATTAAACGGGGTTCAGCTACTGACGCCCAGTTTTTAGATCTGATTCATGCTTGTAAGAAGCTTAAACAGATAGAACTTTCAAATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATCCACCTCTCCCGAGTTAAGAGGTTGGTTTATGGAGCGAAGGCTGAGGCAGCAATTGCGATCGGGTTTGATGATTTCATTGCCGATGCATTGCGAGGTACTGGATTCTATCAGAAAGCACAATTGGAGATTAAAAGAGCTGATGGTAATGAGGCCATGTTTGCTGAAGAGGTTTTCCAGAAAACAAAGGAAAAATTCCAAATGTATTAG 723 0.4219 MEEVNVVETKDGTVSVATAFAGHQEGNASASFSFLVRKRIISTTRDTSYFPLFVYLGDRDHKFLRKAVEEAYKGVDCGHGGPFGAVIVHNDEIVASSHNMVLSYTDPTAHAEVTAIREFRDSIYAGKIKRGSATDAQFLDLIHACKKLKQIELSNCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNEAMFAEEVFQKTKEKFQMY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g1017 240 Gene3D Cytidine Deaminase, domain 2 59 240 - -
Lal7g1017 240 SUPERFAMILY Cytidine deaminase-like 58 198 IPR016193 GO:0003824
Lal7g1017 240 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 58 197 IPR002125 -
Lal7g1017 240 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 60 183 IPR002125 -
Lal7g1017 240 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 135 239 - -
Lal7g1017 240 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 118 - -
Lal7g1017 240 CDD nucleoside_deaminase 64 196 - -
Lal7g1017 240 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN-RELATED 135 239 - -
Lal7g1017 240 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN-RELATED 1 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g1017 Lal-Chr7 16361443 16364115 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g1017 - - cam:101506670 319.316
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1017 7 16361443 16364115 Lal19g1161 19 15117873 15120815 LSH
Lal7g1017 7 16361443 16364115 Lal21g1164 21 14299794 14302931 PCT
Lal21g1164 21 14299794 14302931 Lal7g1017 7 16361443 16364115 PCT