Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1161 ATGGAAGAATTTAATGTGGTGGAAACTAAGGATGGGACTGTTTCAGTAGCTTCTGCTTTTGCTGGTCACCAGGAAGCTGTGCAGGACAGAGACCACAAATTCTTAAGTAAAGCAGTTGAAGAAGCATATAAGGGGGTAGATTCTGGACACGGAGGCCCTTTTGGTGCTGTAATAGTTCATAATGATGAAATAGTTGCTAGTTGTCACAACATGGTTCTGAGTTACACAGACCCAACTGCTCATGCAGAGGTCACAGCAATAAGAGAGGCTTGTAAGAAGCTTAAGCAGATAGAACTTTCACATTGTGAAATATATGCTTCTTGTGAACCTTGCCCCATGTGCTTTGGTGCAATTCACCTTTCCCGTATTAAGAGGTTGGTTTATGGAGCAAAGGCTGAAGCAGCTATTGCTATTGGCTTTGATGACTTTATTGCTGATGCGTTGCGAGGTACTGGATTCTATCAGAAAGCACAGCTTGAGATTAAAAGAGCTGATGGTAATGGGGCAATCATTGCTGAAGAGGTTTTCCAGAAAACAAAGGAAAAATTCCAAATGTATTAG 561 0.4171 MEEFNVVETKDGTVSVASAFAGHQEAVQDRDHKFLSKAVEEAYKGVDSGHGGPFGAVIVHNDEIVASCHNMVLSYTDPTAHAEVTAIREACKKLKQIELSHCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRADGNGAIIAEEVFQKTKEKFQMY 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1161 186 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 29 143 IPR002125 -
Lal19g1161 186 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 1 185 - -
Lal19g1161 186 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 1 185 - -
Lal19g1161 186 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 81 118 IPR016192 GO:0008270|GO:0016787
Lal19g1161 186 CDD nucleoside_deaminase 35 142 - -
Lal19g1161 186 Gene3D Cytidine Deaminase, domain 2 30 185 - -
Lal19g1161 186 SUPERFAMILY Cytidine deaminase-like 24 144 IPR016193 GO:0003824
Lal19g1161 186 Pfam Cytidine and deoxycytidylate deaminase zinc-binding region 30 129 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1161 Lal-Chr19 15117873 15120815 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1161 - - cam:101506670 346.665
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1017 7 16361443 16364115 Lal19g1161 19 15117873 15120815 LSH
Lal19g1161 19 15117873 15120815 Lal21g1164 21 14299794 14302931 PCT
Lal21g1164 21 14299794 14302931 Lal19g1161 19 15117873 15120815 PCT