Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal21g1164 ATGGATGGAACTGTTTCATTTGCTTCTGCATTTGCTGGTCACCAGGAAGAAAAGCAGTTGAAGAGGCATATAAAGGAGGAACAAGGATCCCATGTTCCCAAAAGTTCCTGTCTCAATGTCCCATTTGGTGCTGTTATAGTTTGCAATGATGAAATGGTTGCTACCTCTCACAACATGGTTCTCAGGAACAAAGATCCAACTACTCATGCTGAAGTTACTGCAATAAGAGAGGCTTGTAAGAAGCTTAAGCAAATAGAACTTTCAGATTGTGAGATATATGCTTCTTGTGAACCTTGTCCTATGTGTTTTGGTGCAATTCACCTTTCAAGAGTTAAGAGGTTGGTTTATGGAGCAAAGGCTGAAGCAGCAATTGCAATTGGGTTTGATGATTTTATAGCAGATGCATTAAGAGGCACTGGTTTCTATCAGAAAGCACAATTGGAGATTAAAAGAGCTAATGGTAATGAAGCCATCATTGCTGAAGAGGTTTTCCAGAAGACAAAACAAAAATTTCGTTTGTATTAA 525 0.3886 MDGTVSFASAFAGHQEEKQLKRHIKEEQGSHVPKSSCLNVPFGAVIVCNDEMVATSHNMVLRNKDPTTHAEVTAIREACKKLKQIELSDCEIYASCEPCPMCFGAIHLSRVKRLVYGAKAEAAIAIGFDDFIADALRGTGFYQKAQLEIKRANGNEAIIAEEVFQKTKQKFRLY 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal21g1164 174 PANTHER CYTIDINE/DEOXYCYTIDYLATE DEAMINASE FAMILY PROTEIN 8 173 - -
Lal21g1164 174 SUPERFAMILY Cytidine deaminase-like 36 132 IPR016193 GO:0003824
Lal21g1164 174 Pfam MafB19-like deaminase 34 167 IPR028883 GO:0002100|GO:0008251
Lal21g1164 174 Gene3D Cytidine Deaminase, domain 2 15 173 - -
Lal21g1164 174 PANTHER CYTOSINE DEAMINASE FAMILY MEMBER 8 173 - -
Lal21g1164 174 CDD nucleoside_deaminase 39 130 - -
Lal21g1164 174 ProSitePatterns Cytidine and deoxycytidylate deaminases zinc-binding region signature. 69 106 IPR016192 GO:0008270|GO:0016787
Lal21g1164 174 ProSiteProfiles Cytidine and deoxycytidylate deaminases domain profile. 14 131 IPR002125 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal21g1164 Lal-Chr21 14299794 14302931 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal21g1164 - - cam:101506670 253.447
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g1017 7 16361443 16364115 Lal21g1164 21 14299794 14302931 PCT
Lal19g1161 19 15117873 15120815 Lal21g1164 21 14299794 14302931 PCT
Lal21g1164 21 14299794 14302931 Lal7g1017 7 16361443 16364115 PCT
Lal21g1164 21 14299794 14302931 Lal19g1161 19 15117873 15120815 PCT