Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0903 ATGGAGTCTACTTTAGTGATCAAGGTTAAATACGGAGACACTCTCAGGCGCTTTAGTGCTCAGGTCAATGAGAATAATCAACTGGGTCTTGATATGGTAGGGTTGAGGGCCAAAATATGTTCTCTTTTCAATTTCGCTGCTGACGCAAATTTAATTCTGAGATATGTTGATGAAGATGGCGACCTGGTGACCCTTGTGGATGATAATGATTTACATGATATGATGAGGCAGCGCCTACCATTCCTGAGAATTGATGTACATATCAGCAATGAGATTGGTGGTCGTAAATCTAATACTAGTTCCAGTGGAAATGCCACTCCATTAAGATCCCCTCGTGCCCCTGACCCATCTCTGAGTGGAAATGTTGCTATCGCTGATGTTTGGAAGTCTGTGCAAGAGCCGTTAAATGATGCTCTGTCTAATTTGTGCTTGGTTTCAAAAGCTGTATCTTCTGCAAGTCCATTGCTTGCTAATATTGCTGATACAATTTCCAAAGTGGGAAAACCTATTCTTAATTCTCATTTCCAGCCTAATGCTGCAGCTGGTCCAAGCTCAAAAAATGGTGCTCCCGGAGAAAATGGCATTTCTGAAGCTAATGGTCCAAACTCTACATATGTGAACCCCACTTTTGCTGATTTCATTTCGAAATCGGGAAAACCTCATTTGTATTCTCAGCACCAGCCTCCTATTCCCTCTGGCCCAAGCTCAGAAAATTGTGTTCCTGGCGAACAGGCAAGAGGCCCAAAGTTTGTGTATGGTGACTCAACTTCTGGGAGCCCTTTTCATGCTTTTGCTGATTTCATTTCAAAAGTGGGAAAACATGTTCCAAATTCTCATTACCAATGGCCTCATGTTGTGGCTGGTATTCCTGGAGAACATGTCACTCCTGAACAAAGTGGTCCACAGTCTACACACGTGGGATCAACTTCCAGTGGAACTCAACCCCTGGTGGCTGGAAATCCAATTGGAGGTGAAATGGGAAGAGTTGCTCCTGTTGATATCAATATTCCTCCATCTATTCCCTATTCATCTCAGTCTGCAAATGTGAATGGTGATGGCAAAATGGGTAAAGTGCCTACCAATGATAGTTTTGCTCATAAGGGTAAAATTAGTGGAACTCATAAGGGTAAAATTAGTGGGACATCCTCAAGTTACACTGCTCCTAACAACAGCTCAACTTGGACTAGCTCTACTGCACCTTCTCTAGGAAACCTTCGTGCACATCCATTCAAAAGGAGCCATAGTCAGGTAATGGCGCCATGTGGCATGTTCCATAAGGGTGTCAGCTGTGATGGCTGTGGCATCTATCCAATAATTGGTCCTCGCTTCAAGTCCAATGTAAAAGAAAACTATGACCTCTGCAGCATCTGCTTCAACACAATGGGTAATGCAACTGAATATAGAAGAATTGATCGCCGTCATCCTGGATTCTTCCCGACATTACCACATACTTTGAAGCTTGCAAAGCCTAAGCTGGATAGTCGGTTCATTTTGGATGTCAATGTCATAGATGGAACAATGATGGCTCCATCTACTGCATTTACAAAGATCTGGCGGATCCGCAACAATGGCACTTTAGTGTGGCCCATGGGAACTCAACTTGTTTGGATTGGAGGAGATAATTTTAGCGACTCTCATTCAGTTGACTTAGAGGTTCCCATGGAAGGTGTGCCCGAGGAGAAGGAACTTGACATTGCAGTTGACTTCGTAGCTCCCAAGTTACCTGGTCGATACATATCATACTGGAGGATGGCTGCTCCATCTGGACAAAAATTTGGGCAACGTGTTTGGGTCCTTATTCAGGTTGATACTTCTCTCAGAGACTCTTTCTATGATAGCTCTCAAGGTCTGAACTTGAATATTCCCCTTGATGTCAGTGGCTCCAAACGGCCCCAGATTATAGATATCAATGTTCAACCCACCGATGATGATGCTTTTCTCCAACCTCATATTCCCAATGCACCCACTGAACCTGTTAATGAAATGGTAGATGATCAACTGATGATGCAGAAGTTGGTAGATGATTTCATGCTGGGAAACGATGAGTTCCCAGTTGCTGTTGCTGCCTCGGCCCCTTCAACTTCTGTTGTTGCCTCGGCCCCTTCAACTTCTGTTGCTGCCTCGGCCCCTTCAACTTCTGTTGCTGCCTCGGCCCCTTCAACTTCTGTTGCTGCCTCGGCCCCTACAACTTCTGTTGCTGCCTCTGCCCCTACAACTTCTGTTGCTGCTACCTCACTTCCGACAACTTATGTTGCACCTTCATCTGTTTCTTATCCCATTATCGATTTGTCTGAAACAACCCCTGTTGTTCCATCTAACCAGCAATCTGCAGCTGCGGATGTACCATCATCATCTTTTGGGGTTGGTGGAAATAATTCTGTGGAAGAGACTCTCCTCAAAGAGCTTGAGGTGATGGGTTTTAAGCAGGTTGATTTGAACAAAGAGATCCTGAGAATGAATGAGTACAATCTGGAGCAGTCAGTAGATGATCTTTGTGGTGTTTCTGAGTGGGACCCTATCCTTCAAGAGTTGCATGAAATGGGATTCCACAACAATGAGATGAATAAGAAGCTTCTGATGAAGAACAATGGAAGTATCAAACGCGTGGTTATGGATTTACTTAACGAGGACCTGGCTTAG 2640 0.4439 MESTLVIKVKYGDTLRRFSAQVNENNQLGLDMVGLRAKICSLFNFAADANLILRYVDEDGDLVTLVDDNDLHDMMRQRLPFLRIDVHISNEIGGRKSNTSSSGNATPLRSPRAPDPSLSGNVAIADVWKSVQEPLNDALSNLCLVSKAVSSASPLLANIADTISKVGKPILNSHFQPNAAAGPSSKNGAPGENGISEANGPNSTYVNPTFADFISKSGKPHLYSQHQPPIPSGPSSENCVPGEQARGPKFVYGDSTSGSPFHAFADFISKVGKHVPNSHYQWPHVVAGIPGEHVTPEQSGPQSTHVGSTSSGTQPLVAGNPIGGEMGRVAPVDINIPPSIPYSSQSANVNGDGKMGKVPTNDSFAHKGKISGTHKGKISGTSSSYTAPNNSSTWTSSTAPSLGNLRAHPFKRSHSQVMAPCGMFHKGVSCDGCGIYPIIGPRFKSNVKENYDLCSICFNTMGNATEYRRIDRRHPGFFPTLPHTLKLAKPKLDSRFILDVNVIDGTMMAPSTAFTKIWRIRNNGTLVWPMGTQLVWIGGDNFSDSHSVDLEVPMEGVPEEKELDIAVDFVAPKLPGRYISYWRMAAPSGQKFGQRVWVLIQVDTSLRDSFYDSSQGLNLNIPLDVSGSKRPQIIDINVQPTDDDAFLQPHIPNAPTEPVNEMVDDQLMMQKLVDDFMLGNDEFPVAVAASAPSTSVVASAPSTSVAASAPSTSVAASAPSTSVAASAPTTSVAASAPTTSVAATSLPTTYVAPSSVSYPIIDLSETTPVVPSNQQSAAADVPSSSFGVGGNNSVEETLLKELEVMGFKQVDLNKEILRMNEYNLEQSVDDLCGVSEWDPILQELHEMGFHNNEMNKKLLMKNNGSIKRVVMDLLNEDLA 879
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0903 879 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 374 733 - -
Lal7g0903 879 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 203 - -
Lal7g0903 879 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 753 874 - -
Lal7g0903 879 MobiDBLite consensus disorder prediction 93 117 - -
Lal7g0903 879 Gene3D Immunoglobulins 487 606 IPR013783 -
Lal7g0903 879 MobiDBLite consensus disorder prediction 296 313 - -
Lal7g0903 879 MobiDBLite consensus disorder prediction 93 108 - -
Lal7g0903 879 CDD UBA_NBR1 836 874 - -
Lal7g0903 879 Gene3D - 787 835 - -
Lal7g0903 879 Gene3D - 421 476 IPR043145 -
Lal7g0903 879 Gene3D - 1 88 - -
Lal7g0903 879 PANTHER PROTEIN JOKA2 753 874 - -
Lal7g0903 879 PANTHER PROTEIN JOKA2 1 203 - -
Lal7g0903 879 PANTHER PROTEIN JOKA2 374 733 - -
Lal7g0903 879 MobiDBLite consensus disorder prediction 367 398 - -
Lal7g0903 879 Gene3D - 836 877 - -
Lal7g0903 879 Pfam Ig-like domain from next to BRCA1 gene 501 602 IPR032350 -
Lal7g0903 879 MobiDBLite consensus disorder prediction 292 313 - -
Lal7g0903 879 SMART zz_5 424 469 IPR000433 GO:0008270
Lal7g0903 879 MobiDBLite consensus disorder prediction 177 211 - -
Lal7g0903 879 MobiDBLite consensus disorder prediction 174 253 - -
Lal7g0903 879 SUPERFAMILY RING/U-box 419 461 - -
Lal7g0903 879 MobiDBLite consensus disorder prediction 375 398 - -
Lal7g0903 879 SMART PB1_new 4 89 IPR000270 GO:0005515
Lal7g0903 879 SUPERFAMILY CAD & PB1 domains 4 77 - -
Lal7g0903 879 Pfam Zinc finger, ZZ type 425 463 IPR000433 GO:0008270
Lal7g0903 879 ProSiteProfiles PB1 domain profile. 4 89 IPR000270 GO:0005515
Lal7g0903 879 CDD NBR1_like 490 603 IPR032350 -
Lal7g0903 879 ProSiteProfiles Zinc finger ZZ-type profile. 425 475 IPR000433 GO:0008270
Lal7g0903 879 CDD UBA_NBR1 794 832 - -
Lal7g0903 879 Pfam PB1 domain 5 77 IPR000270 GO:0005515
Lal7g0903 879 SUPERFAMILY UBA-like 836 875 IPR009060 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0903 Lal-Chr7 15528192 15532664 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0903 K17987 - gmx:100816395 740.725
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal7g0903 7 15528192 15532664 Lal7g0903 7 15528192 15532664 ECH
Lal14g1496 14 15880133 15885253 Lal7g0903 7 15528192 15532664 LSH
Lal7g0903 7 15528192 15532664 Lal19g1053 19 14307995 14311168 LSH