Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g1053 ATGGTTGGGTTGAAGGCGAAGATTTGTTCACTTCTCAATTTCAATGCTTATTCAAATTTAATGCTGAGATATATCGATGAAGACGGGGACTTGGTGACCCTTGTGGATGATGATGATTTGAATGATATGATGATGCAGCGCCTACTGTTCTTGAGAATTAGTGTAGATATGAGCAATGACAGTGGTGGTAAATCAAGTGCCATTTCTAATGGAAATGTTGCTATTGCTGATGTTCTGAAGTCTGTGCAAGAGCCATTAAACATTGCTCTTTCTAGTTTATGCTTGGTTTCAAAAGCTTTATCTTCTGCAAGTCCAGTATCTGCTAATCTTGATGATACCATTTCCAAAGTGAGAAAACCGATTCCAAATTCTCATTTGCAGCCTGATGTTGCAGCTGTTCCAAGCTCAAAAAATGGTGCACCTGAAGAACATGCCATTTCTGAAACTAAAGGTCCAAAGTCAACATATGTGAACCAGCCTCATATTACTTCTAGCCCAAGCTCAAAAAATTGTGTTCCTAACGACCCAGCAAGAGTTCCACAACCTGTAAATGGTTACTCATTATCTGCAAGGCGTTCTCGTGCTGTTGCCAAATTCGTGTCTAGAATGAGAAAACATGTTCAAAATTCTCCTTACCAATGGCTTGATGTTTGGGGTGGTGTTCCTGAAGAACATGTTCGTCCCGGAGAAAGAGGTCCACAATCTACATATGTGGACCCAGCTTCCTATGGAAGTCAGCCCATGGAGGCTGGAAATTTAATAAGAGGTGCAATGGAAAGAGTTACTCCTTTTGATCTCAATGTCTCTCTGTCTGATCCATATTCATCTCAGTCTGCTAATGTAAACATTATACCTCTTTCATCAGCAGTATCTGGTGTGAATGGCAAAAAGGATAAAGCACCTACCAATGATAGTTTTGATCATAAGGGCAAAATTTGTGGGTCTCATAATGATAAAATTAGTGGAACCTCCTCAACCTCTGCTGCTCCTAATAATTGCCCAACTAGGACTAGTTCTAGTTCTTGCACTAAGACTCCAATTTATACTGGTGATACTGCTTTACCTCCTTTAGGAAACTTTCGTGCTCAACCATTCAAAAAGAGCGATGGCCGTGTAATGGCGCTTCGTTCCATGATTCATAAGGGTATCTGCTGTGATGGCTGTGGTGCATGTCCAATAATGGGACCTCGCTTCAAATCCAAAGTAAAAGAAAATTATGACCTATGCAGCATCTGCTTCAAAGCAATGGGTAATGTGACTGATTATAGCAGAATCGACCGCCATCATCCTGGATGCAACCCGACATTACCACATACTTTGAATGTTGCAAGGCCTAAGCTAGATAGTCGGTTCATTATGGATGTCACTGTCATAGATGGCTCAATGATGGCTCCATCTACTGCATTTACTAAGATCTGGCGAATCGGTAACAATGGCACTTTAGTGTGGCCCAAGGGAACTCAGCTTGTTTGGATTGGAGGGGATAATTTTAGTGACTCTCATTCAGTTGACTTAGAGGTTCCCGAGGAAGGTGTACCTGTGGATAAGGAACTTGATATTGAAGTTAAGTTCATAGCTCCTATGTTACCCGGTATATACATATCTTACTGGGGGATGGCATCTCCATCTGGACAGAAATTTGGGCAGCATGTTTGGGTCCGTATTCAGGTTGTTGCTTCTCTCAAGGTCTCATTTTATGACAGTCATCATGTTTGGAACTTGGATATTCTCCGGGATGTGAGTAGCCTTAAAGGGGCCCGGATTATCGATTTCAATGTTCAACCTACTGAGAATGATGCTTTTCAACCCCATGTACCAAATGCTCCCACTGTACCTGTTAGTAAAATGATAGAAAATCAACAGATGCAAGAGCTGGTTAACAATTACATTAAGACTATCTCTGCAGCTGCTTTTTCCCCTGTTCCCTCAGCACCTGCAACTTCTTTTGCCATGGTAGATAATCAATTCAGGCAGAAGATGGATAACTATTCCAATGATGTTGCTGTCACTGCCACCTCTGCTGCTGCCGCTGCCCCGGCAACTTATGCTGCTGCCGCTGCCCCGGCAACTTATGCTGCTGCGGCCGCCACCCCTGCAACTTATGCTGCTGTGGCCTCCGCCCCTGCAACTTATGCTGCTGCCGCCCCTGCCACTTCTATGGAAACGGTAGATAATCAGCTGATGCTCGATGTGATTAATGAAATTATGCTGATAAAAAAGTCAAAAGCAGCAACTTCTTCTGTTGCCTCAGACCCTTCAGCTTCTGCTGCTGCCTCACTCCCTGCAACTTCTATTGCACCTTCATCTGTTTCTTATCCTGTTATCTATTTGTCCGAAACAACCCCTGATGTTCCTTCTAACCAGCAATCCGCAGCAGTGGGTGCACCATCATCATCTTTGTTAGTTGATGGAAATAATTCTATTGAAGAACCTCTCCTTAAAGAGCTTGAGGAGATGGGTTTTAAGCAGATTGATTTGAACAGTGACATCCCGAGGTTGAATGAGTACAATATGGAGCGATCACTAGATAATCTCTGTGGTGTTTCTGAGTGGGATCCTATCCTTAAAGAGTTGCATGAAATGGGTTTCCTTAACACTGAGATGAACAAGAAGCTGCATATGAAGAACAATGGAAACATCAATCTTATAGTTATGGATTTGCTCAATGGGGAGCAGGCTTAG 2682 0.4284 MVGLKAKICSLLNFNAYSNLMLRYIDEDGDLVTLVDDDDLNDMMMQRLLFLRISVDMSNDSGGKSSAISNGNVAIADVLKSVQEPLNIALSSLCLVSKALSSASPVSANLDDTISKVRKPIPNSHLQPDVAAVPSSKNGAPEEHAISETKGPKSTYVNQPHITSSPSSKNCVPNDPARVPQPVNGYSLSARRSRAVAKFVSRMRKHVQNSPYQWLDVWGGVPEEHVRPGERGPQSTYVDPASYGSQPMEAGNLIRGAMERVTPFDLNVSLSDPYSSQSANVNIIPLSSAVSGVNGKKDKAPTNDSFDHKGKICGSHNDKISGTSSTSAAPNNCPTRTSSSSCTKTPIYTGDTALPPLGNFRAQPFKKSDGRVMALRSMIHKGICCDGCGACPIMGPRFKSKVKENYDLCSICFKAMGNVTDYSRIDRHHPGCNPTLPHTLNVARPKLDSRFIMDVTVIDGSMMAPSTAFTKIWRIGNNGTLVWPKGTQLVWIGGDNFSDSHSVDLEVPEEGVPVDKELDIEVKFIAPMLPGIYISYWGMASPSGQKFGQHVWVRIQVVASLKVSFYDSHHVWNLDILRDVSSLKGARIIDFNVQPTENDAFQPHVPNAPTVPVSKMIENQQMQELVNNYIKTISAAAFSPVPSAPATSFAMVDNQFRQKMDNYSNDVAVTATSAAAAAPATYAAAAAPATYAAAAATPATYAAVASAPATYAAAAPATSMETVDNQLMLDVINEIMLIKKSKAATSSVASDPSASAAASLPATSIAPSSVSYPVIYLSETTPDVPSNQQSAAVGAPSSSLLVDGNNSIEEPLLKELEEMGFKQIDLNSDIPRLNEYNMERSLDNLCGVSEWDPILKELHEMGFLNTEMNKKLHMKNNGNINLIVMDLLNGEQA 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g1053 893 SUPERFAMILY RING/U-box 378 430 - -
Lal19g1053 893 ProSiteProfiles Zinc finger ZZ-type profile. 380 430 IPR000433 GO:0008270
Lal19g1053 893 Gene3D Immunoglobulins 441 561 IPR013783 -
Lal19g1053 893 PANTHER PROTEIN JOKA2 763 892 - -
Lal19g1053 893 PANTHER PROTEIN JOKA2 1 118 - -
Lal19g1053 893 PANTHER PROTEIN JOKA2 263 597 - -
Lal19g1053 893 Gene3D - 850 891 - -
Lal19g1053 893 MobiDBLite consensus disorder prediction 151 174 - -
Lal19g1053 893 Gene3D - 803 849 - -
Lal19g1053 893 Pfam Zinc finger, ZZ type 379 415 IPR000433 GO:0008270
Lal19g1053 893 Pfam PB1 domain 19 46 IPR000270 GO:0005515
Lal19g1053 893 MobiDBLite consensus disorder prediction 317 340 - -
Lal19g1053 893 SMART zz_5 379 424 IPR000433 GO:0008270
Lal19g1053 893 MobiDBLite consensus disorder prediction 292 311 - -
Lal19g1053 893 Gene3D - 374 432 IPR043145 -
Lal19g1053 893 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 263 597 - -
Lal19g1053 893 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 1 118 - -
Lal19g1053 893 PANTHER OVARIAN CARCINOMA ANTIGEN CA125-RELATED 763 892 - -
Lal19g1053 893 SUPERFAMILY CAD & PB1 domains 3 46 - -
Lal19g1053 893 SUPERFAMILY UBA-like 850 891 IPR009060 GO:0005515
Lal19g1053 893 CDD NBR1_like 445 558 IPR032350 -
Lal19g1053 893 Gene3D - 2 54 - -
Lal19g1053 893 MobiDBLite consensus disorder prediction 120 175 - -
Lal19g1053 893 CDD UBA_NBR1 850 888 - -
Lal19g1053 893 Pfam Ig-like domain from next to BRCA1 gene 456 557 IPR032350 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g1053 Lal-Chr19 14307995 14311168 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g1053 K17987 - gmx:100778692 459.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g1053 19 14307995 14311168 Lal19g1053 19 14307995 14311168 ECH
Lal14g1496 14 15880133 15885253 Lal19g1053 19 14307995 14311168 LSH
Lal7g0903 7 15528192 15532664 Lal19g1053 19 14307995 14311168 LSH