Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal7g0847 ATGTCTGGTGCTGTAGACATGGACCACGTGGGGTTTTCCAAAGCCAAATCCACGGCGGCTCCGGCCGCAGGTCACGGCAAGAAAACGGGACCGGTTTCAATGGATCATGTCTTACTTGCGTTGCGCGAGACGAAAGAAGAGAGGGATCTTAGAATTCGGAGTTTGTTCAATTTCTTTGATGCTGTCAACAATGGATACTTGGATTATGCTCAAATTGAAGCAGGGTTATCTGCACTGCATATACCCCCTGAGTATAAGTATGCTAAAGAGCTTTTCAAAGTGTGTGATGCTGATAGGGATGGTAGGATTGATTATGCCGATTTTCGACGGTATATGGATGATAAGGAATTGGAACTTTACCGAATTTTTCAAGCTATTGATGTTGAACACAATGGCTGCATTCTACCCGAAGAGCTTTGGGATGCACTTGTTAAGGCTGGTTGTTGCATTGGCTGTGGTTGTGGCTGTGACAACCTTGCTGTGAGAAACTTATCGGGGATTGAAATGGATGAGGAGGAGCTTGCTCGCTTTGTAGAACATGTTGATAAGGATAATAACAGGATCATCACTTTTGAAGAATGGAGAGATTTTCTGCTACTTTATCCTCATGAAGCAACTATAGAGAATATATATCATCATTGGGAGAGGGTTTGCCTCGTAGACATTGGAGAACAAGCTGTCATTCCCGAAGGCATCAGCAAGCATGTGCACAGGAGCCGATATTTTATTGCAGGGGGGATTGCTGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTCAAGGTGGTGTTACAAGTTCAATCTGAGCGTGCTTTTATTATGCCAGCCGTGATGAAGATATGGAAACAAGATGGTTTATTAGGGTTTTTCCGTGGTAATGGATTAAATGTTGTGAAGGTAGCACCAGAAAGTGCTATCAAGTTTTATGCTTATGAAATGCTGAAAAATGTAATCGGAGAGGCTCAAGGGAACAAGTCCGCAGATATTGGTACTGCTGGAAGACTAGTTGCAGGTGGTATGGCTGGTGCGGTTGCACAGATGGCTATATATCCGATGGATCTTATTAAAACTAGGTTACAGACTTGTGCTTCTGATGGCGGAAGGGTTCCGAAGCTGGGAAGACTTACAAAGGATATATGGGTTCATGAGGGACCACGGGCTTTCTACAGAGGGCTTGTTCCGTCTCTTCTCGGTATGATTCCTTATGCAGGCATTGATCTCACTGCTTATGACACCTTGAAAGATATGTCGAAGAGATATATTCTTGACAGCGAACCCGGTCCTCTAGTACAACTGGGATGTGGAACTATCTCAGGAGCTGTTGGAGCTACCTGTGTCTATCCACTTCAGGTTATCCGTACAAGATTGCAGGCACAACCCTGCAACTCTTCAAATGCATACAAGGGAATGTCTGATGTATTTTGGAAAACTCTTAAGGATGAAGGCTTCAGAGGTTTCTACAAGGGACTCATTCCAAATCTCCTCAAAGTTGTGCCTGCTGCAAGCATTACTTATATGGTCTATGAAAATATGAAGAAGAATCTAGATCTAGATTAG 1563 0.4402 MSGAVDMDHVGFSKAKSTAAPAAGHGKKTGPVSMDHVLLALRETKEERDLRIRSLFNFFDAVNNGYLDYAQIEAGLSALHIPPEYKYAKELFKVCDADRDGRIDYADFRRYMDDKELELYRIFQAIDVEHNGCILPEELWDALVKAGCCIGCGCGCDNLAVRNLSGIEMDEEELARFVEHVDKDNNRIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQVQSERAFIMPAVMKIWKQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGEAQGNKSADIGTAGRLVAGGMAGAVAQMAIYPMDLIKTRLQTCASDGGRVPKLGRLTKDIWVHEGPRAFYRGLVPSLLGMIPYAGIDLTAYDTLKDMSKRYILDSEPGPLVQLGCGTISGAVGATCVYPLQVIRTRLQAQPCNSSNAYKGMSDVFWKTLKDEGFRGFYKGLIPNLLKVVPAASITYMVYENMKKNLDLD 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal7g0847 520 Pfam Mitochondrial carrier protein 429 517 IPR018108 -
Lal7g0847 520 Pfam Mitochondrial carrier protein 331 419 IPR018108 -
Lal7g0847 520 Pfam Mitochondrial carrier protein 239 321 IPR018108 -
Lal7g0847 520 ProSitePatterns EF-hand calcium-binding domain. 182 194 IPR018247 -
Lal7g0847 520 SMART efh_1 87 115 IPR002048 GO:0005509
Lal7g0847 520 SMART efh_1 173 201 IPR002048 GO:0005509
Lal7g0847 520 SMART efh_1 51 79 IPR002048 GO:0005509
Lal7g0847 520 SMART efh_1 118 146 IPR002048 GO:0005509
Lal7g0847 520 Gene3D Mitochondrial carrier domain 232 518 IPR023395 -
Lal7g0847 520 ProSiteProfiles Solute carrier (Solcar) repeat profile. 236 319 IPR018108 -
Lal7g0847 520 ProSiteProfiles Solute carrier (Solcar) repeat profile. 331 418 IPR018108 -
Lal7g0847 520 Gene3D - 156 224 - -
Lal7g0847 520 PRINTS Mitochondrial carrier protein signature 241 254 IPR002067 GO:0055085
Lal7g0847 520 PRINTS Mitochondrial carrier protein signature 254 268 IPR002067 GO:0055085
Lal7g0847 520 PRINTS Mitochondrial carrier protein signature 294 314 IPR002067 GO:0055085
Lal7g0847 520 PRINTS Mitochondrial carrier protein signature 346 364 IPR002067 GO:0055085
Lal7g0847 520 PRINTS Mitochondrial carrier protein signature 391 409 IPR002067 GO:0055085
Lal7g0847 520 PRINTS Mitochondrial carrier protein signature 437 459 IPR002067 GO:0055085
Lal7g0847 520 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Lal7g0847 520 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
Lal7g0847 520 SUPERFAMILY Mitochondrial carrier 235 512 IPR023395 -
Lal7g0847 520 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Lal7g0847 520 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 61 518 - -
Lal7g0847 520 PANTHER SOLUTE CARRIER FAMILY 25 61 518 - -
Lal7g0847 520 Gene3D - 27 152 - -
Lal7g0847 520 ProSiteProfiles Solute carrier (Solcar) repeat profile. 428 516 IPR018108 -
Lal7g0847 520 SUPERFAMILY EF-hand 37 235 IPR011992 -
Lal7g0847 520 ProSiteProfiles EF-hand calcium-binding domain profile. 169 204 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal7g0847 Lal-Chr7 15057524 15060782 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal7g0847 9 520 EF-hand Containing Proteins AT5G51050 72.780 0.0 751
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal7g0847 K14684 - gmx:100791305 887.871
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0993 19 13818482 13821032 Lal7g0847 7 15057524 15060782 ECH
Lal7g0847 7 15057524 15060782 Lal7g0847 7 15057524 15060782 ECH
Lal14g1418 14 15427989 15432961 Lal7g0847 7 15057524 15060782 LSH
Lal7g0847 7 15057524 15060782 Lal19g0993 19 13818482 13821032 LSH