Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal19g0993 ATGTGTGGTGCCATAGACATGGACCACGTGGGGTTTTCAAAAACCAAATCCACGGCGGCTCCGGCCGCCAGTCACGGCAAGAAAACGGGTCCCGTTTCAATGGACCATGTGCTACTTGCTTTGCGCGAGACAAAAGAAGAGAGGGATATTCGAATTCAGAGTTTGTTCAATTTCTTTGATGCTGCAAATAATGGGTACTTGGATTATGCTCAAATTGAAGCAGGGTTGTCTGCACTGCAGATACCCCCTGAGTATAAATATGCTAAGGAACTGTTCAAGGTTTGTGATGCTGATAGGGATGGGAGGATCGATTACGATGATTTTCGCCGATATATGGATGATAAGGAGTTGGAACTTTATCGAATTTTTCAGGCTATTGATTTGGAACACAGTGGCTGCATTCTACCTGAAGAGCTTTGGGATGCACTTGTACTCAAGATGGTATCGTCTTCTGCAATTTGTGGATGCTTTTCTTATTCTCAAGTTCCAGTTTTCCTCATAGTATATATCATAAGCATATGCAGCTTCTATGCTGCAGGGATTGAGATGGATGAAGAGGAGCTCGCTCGTTTTGTAGAGCATGTTGATAAGGATAATAACGGGATCATCACCTTTGAAGAATGGAGAGATTTTCTGCTACTTTATCCTCATGAAGCAACTATCGAAAATATATATCATCATTGGGAGAGGGTGTGCCTTGTAGACATTGGAGAACAAGCAGTCATTCCTGAAGGCATTAGCAAGCATGTGCACAGGAGCAGATACTTCATTGCTGGGGGGATAGCCGGAGCTGCTTCTCGCACAGCAACTGCTCCTCTTGATCGTCTAAAGGTGGTTTTACAAGTTCAGACTGGAAGTGCTTCTATTATGCCAGCCGTAATGAAGATATGGAAACAAGATGGCTTATTAGGGTTTTTCCGTGGTAATGGATTAAATGTTGTGAAGGTAGCACCGGAAAGTGCTATCAAGTTTTATGCTTACGAAATGCTGAAAAATGTAATTGGAGAGGGTCAAGGGAACAAGTCAACTGACATTGGTACTGCTGGAAGACTATTTGCAGGTGGTATGGCTGGTGCGATTGCACAGATGGCTATATATCCGATGGATCTTATTAAAACTAGGTTACAGACTTGTGATTCTGAAGGTGGAAGGGTTCCTAAACTGGGTAGACTCACAAAGGATATATGGGTTCAAGAGGGACCTCGGGCTTTCTACAGAGGACTTGTTCCATCGCTTCTCGGTATAATTCCTTATGCAGGCATCGATCTCACTGCTTATGACACCTTGAAAGATATGTCGAAGAGATATATTCTTGACAGCGAACCTGGTCCTCTGGTACAACTGGGATGTGGGACAATCTCAGGAGCTGTTGGAGCTACCTGTGTCTATCCGCTGCAGGTTATTCGGACAAGACTACAGGCACAGCCATGCAACTCTTCTACTGCGTACAAGGGGATGTCTGATGTATTTTGGAAAACTCTTAAGGATGAAGGCTTTAGAGGTTTCTATAAGGGTCTCTTTCCAAATCTCCTCAAAGTTGTGCCTGCTGCAAGTATTACTTATATGGTCTATGAAAATATGAAGAAGAAACTAGATCTAGATTAG 1605 0.4336 MCGAIDMDHVGFSKTKSTAAPAASHGKKTGPVSMDHVLLALRETKEERDIRIQSLFNFFDAANNGYLDYAQIEAGLSALQIPPEYKYAKELFKVCDADRDGRIDYDDFRRYMDDKELELYRIFQAIDLEHSGCILPEELWDALVLKMVSSSAICGCFSYSQVPVFLIVYIISICSFYAAGIEMDEEELARFVEHVDKDNNGIITFEEWRDFLLLYPHEATIENIYHHWERVCLVDIGEQAVIPEGISKHVHRSRYFIAGGIAGAASRTATAPLDRLKVVLQVQTGSASIMPAVMKIWKQDGLLGFFRGNGLNVVKVAPESAIKFYAYEMLKNVIGEGQGNKSTDIGTAGRLFAGGMAGAIAQMAIYPMDLIKTRLQTCDSEGGRVPKLGRLTKDIWVQEGPRAFYRGLVPSLLGIIPYAGIDLTAYDTLKDMSKRYILDSEPGPLVQLGCGTISGAVGATCVYPLQVIRTRLQAQPCNSSTAYKGMSDVFWKTLKDEGFRGFYKGLFPNLLKVVPAASITYMVYENMKKKLDLD 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal19g0993 534 SUPERFAMILY EF-hand 37 249 IPR011992 -
Lal19g0993 534 SUPERFAMILY Mitochondrial carrier 249 526 IPR023395 -
Lal19g0993 534 PANTHER SOLUTE CARRIER FAMILY 25 181 532 - -
Lal19g0993 534 PANTHER SOLUTE CARRIER FAMILY 25 60 145 - -
Lal19g0993 534 Gene3D Mitochondrial carrier domain 246 532 IPR023395 -
Lal19g0993 534 Pfam Mitochondrial carrier protein 253 335 IPR018108 -
Lal19g0993 534 Pfam Mitochondrial carrier protein 443 531 IPR018108 -
Lal19g0993 534 Pfam Mitochondrial carrier protein 345 433 IPR018108 -
Lal19g0993 534 Gene3D - 27 157 - -
Lal19g0993 534 ProSiteProfiles Solute carrier (Solcar) repeat profile. 442 530 IPR018108 -
Lal19g0993 534 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Lal19g0993 534 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 181 532 - -
Lal19g0993 534 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 60 145 - -
Lal19g0993 534 Gene3D - 174 238 - -
Lal19g0993 534 Pfam EF-hand domain pair 118 210 IPR002048 GO:0005509
Lal19g0993 534 Pfam EF-hand domain pair 51 112 IPR002048 GO:0005509
Lal19g0993 534 PRINTS Mitochondrial carrier protein signature 255 268 IPR002067 GO:0055085
Lal19g0993 534 PRINTS Mitochondrial carrier protein signature 268 282 IPR002067 GO:0055085
Lal19g0993 534 PRINTS Mitochondrial carrier protein signature 308 328 IPR002067 GO:0055085
Lal19g0993 534 PRINTS Mitochondrial carrier protein signature 360 378 IPR002067 GO:0055085
Lal19g0993 534 PRINTS Mitochondrial carrier protein signature 405 423 IPR002067 GO:0055085
Lal19g0993 534 PRINTS Mitochondrial carrier protein signature 451 473 IPR002067 GO:0055085
Lal19g0993 534 SMART efh_1 51 79 IPR002048 GO:0005509
Lal19g0993 534 SMART efh_1 87 115 IPR002048 GO:0005509
Lal19g0993 534 SMART efh_1 118 146 IPR002048 GO:0005509
Lal19g0993 534 SMART efh_1 187 215 IPR002048 GO:0005509
Lal19g0993 534 ProSiteProfiles EF-hand calcium-binding domain profile. 47 82 IPR002048 GO:0005509
Lal19g0993 534 ProSiteProfiles EF-hand calcium-binding domain profile. 183 218 IPR002048 GO:0005509
Lal19g0993 534 ProSiteProfiles Solute carrier (Solcar) repeat profile. 250 333 IPR018108 -
Lal19g0993 534 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Lal19g0993 534 ProSitePatterns EF-hand calcium-binding domain. 196 208 IPR018247 -
Lal19g0993 534 ProSiteProfiles Solute carrier (Solcar) repeat profile. 345 432 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal19g0993 Lal-Chr19 13818482 13821032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal19g0993 9 534 EF-hand Containing Proteins AT5G51050 70.301 0.0 748
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal19g0993 K14684 - gmx:100791305 866.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal19g0993 19 13818482 13821032 Lal7g0847 7 15057524 15060782 ECH
Lal19g0993 19 13818482 13821032 Lal19g0993 19 13818482 13821032 ECH
Lal14g1418 14 15427989 15432961 Lal19g0993 19 13818482 13821032 LSH
Lal7g0847 7 15057524 15060782 Lal19g0993 19 13818482 13821032 LSH