Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal5g0029 ATGAGTCGCCGAAACGGCGTCTACTGTAATAATACCGGCAAAGAAGCTGCTACATTTGGATGGCGAGATCGAGGGCGATACCCTCAACAACCACCATGGCGGAATCGAAACTGGGCCTCAAACTCCAGGCCGTTCCGTTCTACTCATATGGCGGGAGAAACAACAGTATGGGTCCGCCGCTATGACAATGCCTCACGAAGGGAGACTAGGGAGTTTGATCCAAATTCAGAACCCGGTGAGGAAGGTGACAAAGATGCAATTGTTGTTTCTATAGATGAAAAGTTACCCGATGACTTGTTGAGAGTCGTCCTAGCTTTTCTTCCCGTCGAAAGCATTGCCAAAGCCCGTTGTGTGAGTAAAAGATGGCATGGCATTGTTATTTCCAAGACTTTTTTATGGAACCTCTCACATATTCCACCACAGAAGCCTTGGTACTTTATGTTTACTAGCTCTGATGAACCGATTGGTTATGCTTATGACCCCATCCTTCGGAAATGGTACAGCATAGACCTTCCATTCATCGGCACTTCTAATTGGTTCATTGCTTCATCGTGTGGCATGGTTTGCTTCATGGACAATGACAACATAAGCAACTTATGTGTGTGCAACCCTATCACCAAAACCTGCAGGAAGCTCAAGGAACCACCAGGTTTGAAATTTCCTGACTATAACGCATTAGCGATGTCGGTTAACAGGGAATCTCAGAGTTATACTGTGACGATTGTGAAATCGAAACAAGTCCCTGACAACTTTGTCCAGTGGGATATCTCGATTCATATATATGACTCCGAGAAAGTGGAGTGGATGACGTCTTTAACCGAAGTTTTGACGGGTTGGAGAAGCGGTGATGAGAGCGTGATATGTAACGGAGTGCTATACTTTTTAGTTTATGCAACCGGGGGTATTCAAACAGAAATTCGCCATGCTCTAATTACATACGACCTGTCAAACGGTTCTTCTCAAATCCGCTTATCAAGGAGCTTTATTCAAGTACCATGTTCTCTAACATGTGGCCGTCTGATGGACATGAATGGGAAGCTAGTAATGGTGGGAGGAATTGGTAAACCGGATCGAACTGACATAATAAAAGGGATCGGAATCTGGATTCTAAATGATAGAAACTGGGAAGAGATTGGTAGAATGCCGCACAGATTCTTCCAGGGCTTTGGAGAATTAGATGATGTTTTTGCGAGCCGTGGAGGGGAGGATCTGATTTATATACAGAGTTATGGAGCTCCAGCACTTCTGATTTTCGACATGAGTCAACGACATTGGAAGTGGGCACAGAAGTGTCCGGTGGCAAAAAGGTTCCCGTTGCAGCTTTTCAGTGGTTTTTGCTTTGAACCTAGGCTCGAAATGACACCATGGTTCTCTTCGGTATGA 1383 0.4497 MSRRNGVYCNNTGKEAATFGWRDRGRYPQQPPWRNRNWASNSRPFRSTHMAGETTVWVRRYDNASRRETREFDPNSEPGEEGDKDAIVVSIDEKLPDDLLRVVLAFLPVESIAKARCVSKRWHGIVISKTFLWNLSHIPPQKPWYFMFTSSDEPIGYAYDPILRKWYSIDLPFIGTSNWFIASSCGMVCFMDNDNISNLCVCNPITKTCRKLKEPPGLKFPDYNALAMSVNRESQSYTVTIVKSKQVPDNFVQWDISIHIYDSEKVEWMTSLTEVLTGWRSGDESVICNGVLYFLVYATGGIQTEIRHALITYDLSNGSSQIRLSRSFIQVPCSLTCGRLMDMNGKLVMVGGIGKPDRTDIIKGIGIWILNDRNWEEIGRMPHRFFQGFGELDDVFASRGGEDLIYIQSYGAPALLIFDMSQRHWKWAQKCPVAKRFPLQLFSGFCFEPRLEMTPWFSSV 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal5g0029 460 Gene3D - 88 135 - -
Lal5g0029 460 PANTHER F-BOX FAMILY PROTEIN 38 455 IPR045048 -
Lal5g0029 460 Gene3D - 181 448 IPR015915 GO:0005515
Lal5g0029 460 MobiDBLite consensus disorder prediction 25 45 - -
Lal5g0029 460 ProSiteProfiles F-box domain profile. 89 136 IPR001810 GO:0005515
Lal5g0029 460 SUPERFAMILY Galactose oxidase, central domain 148 434 IPR011043 -
Lal5g0029 460 Pfam F-box domain 94 126 IPR001810 GO:0005515
Lal5g0029 460 SUPERFAMILY F-box domain 93 196 IPR036047 GO:0005515
Lal5g0029 460 TIGRFAM F_box_assoc_1: F-box protein interaction domain 185 378 IPR017451 -
Lal5g0029 460 PANTHER BNAA09G39300D PROTEIN 38 455 - -
Lal5g0029 460 SMART fbox_2 95 135 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal5g0029 Lal-Chr5 365930 370416 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal5g0029 - - lang:109329535 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal5g0029 5 365930 370416 Lal5g0029 5 365930 370416 ECH
Lal5g0029 5 365930 370416 Lal18g0263 18 2184859 2187953 LSH
Lal5g0029 5 365930 370416 Lal6g1009 6 7208885 7211434 PCT
Lal5g0029 5 365930 370416 Lal18g0263 18 2184859 2187953 PCT
Lal6g1009 6 7208885 7211434 Lal5g0029 5 365930 370416 PCT
Lal18g0263 18 2184859 2187953 Lal5g0029 5 365930 370416 PCT