Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal6g0474 ATGTCAAGTGGTGGATGCAGCATAGTTTGGTTCAGAAGGGATCTGAGGGTTGAGGATAACCCTGCACTGATGGCAGGAGTAAGAGCAGGATCTGTTGTTGCTGTTTTCATTTGGGCTCCTGAAGAAGAAGGTCAATACCAACCTGGTAGGGTTTCAAGGTGGTGGCTTAAGCATAGTTTGGCTTACCTTGATTCATCTTTGAGAAATCTTGGAACCCCTCTTATTACTAAGAGATCCACTGATAGTGTTTCTGCTCTATTAGAGGTTGTTAAGTCCACTGGTGCTACTCAACTTTTCTTTAACCACTTATATGATCCATTGTCACTTATCAGGGATCACCGAACAAAGGAGGTTCTGACTGCTCATGGCATAACCGTGCGTTCCTTTAATTCAGACTTATTGTATGAACCATGGGATGTCAACGATGACCGTGGCCAACCATTCACAACTTTTGATGCTTTTTGGGAAAGATGCCTTAACATGCCTTATGACCCACAATCACCTTCTCTCCCACCTAAAAGGATTATTCCAGGAGATACATCAAGGTGCCGGAGTGATACATTGGTGTTTGAAGATGAATCAGAGAAGTCAAGCAATGCACTTCTTGCTCGAGCATGGTCACCCGGGTGGAGTAATGCAGACAAGGCTTTGACAACATTTATAAATGGTCCACTGATTGAGTACTCAGAAAATCGCAGGAAGGCTGACAGTGCAACAACCTCATTTCTGTCCCCTCATTTACATTTCGGTGAGGTGAGTGTCAAGAAAGTTTTCCATCTTGTCCGGATCAAGCAAGTACTTTGGGCAAATGAAGGAAATAAGGCTGGTGAAGAAAGTGTTAACTTGTTTCTCAAGTCTATTGGGCTTAGAGAGTATTCAAGGTACATCAGTTTCAACCATCCATATAGTCATGAAAGGCCTCTTCTAGGCCACCTCAAGTTTTTTCCTTGGGTGTTAAATGGAGGCTATTTTAAGGCGTGGAGACAAGGCAGAACAGGTTACCCATTGGTGGATGCTGGCATGAGAGAGTTATGGGCCACTGGTTGGCTTCATGATCGGATACGTGTTGTTGTTTCTAGTTTCTTTGTGAAGGTTCTGCAGCTTCCTTGGAGATGGGGAATGAAGTATTTCTGGGATACCCTGTTGGATGCTGATCTTGAGAGTGATGCTCTTGGTTGGCAGTACATAACTGGTACTCTACCTGATGGTCGTGAATTTGACCGAATAGATAATCCACAGTTTGAGGGATACAGATTTGACCCCAATGGAGAATATGTACGACGCTGGCTTCCTGAGCTTTCCAGATTACCAACTCAATGGATACATCATCCATGGAATGCGCCAGAATCTGTAATTCAAGCTGCTGGTATTGAACTTGGATCAAACTACCCTCTTCCAATTGTGGGAATAGATGAAGCAAAAGCAAGACTGCAAGAAGCACTGCTACAAATGTGGCAACAAGAAGCAGCTTATAGAGCTGCGACTGAAAATGGAACTGAGGAAGGGCTTGGAGATTCCTTTGAGTCAACCCCGATTGCTTTTCCCGATGACATACAAATGGAGGAAAGACATGAACCTGCTAGGAACAATCCTCCTCCTGCTGCAGCTACTCGGCGCTACGAGGATCAGATGGTCCCGAGCATCACTTCTTCCTTGGCAAGAGTGGAAGAGGAAGAAACTTCATTGGATGTTCAAAACTCAGCAGAAGAGAACAGAGCTGAAGTTCCAGTAAATGTGATTGCACAACAAAATGCAAGAGAGACAGTGTTGCGCACTGCTAACCGGAACACTCAACTACCACATAATAATACTACGATGTGGTTGAGAAATGCAGCTGAAGATTCTACAGCAGAATCTTCAAGTAGTACTAGGAGAGAAAGGGGTGGAGAAGTTCCAGAGTGGTCTCCCACAGCTTCTAGTTACCCAGAGCCATTTGTAGATGATGAAAATGGTATAGGAGCCAGTTCATCTTACTTGCAGAGGCATCCTCAGTCTCACCAATTGATGAATTGGACAAGGTTACCTCAAACTGGGTGA 2037 0.4438 MSSGGCSIVWFRRDLRVEDNPALMAGVRAGSVVAVFIWAPEEEGQYQPGRVSRWWLKHSLAYLDSSLRNLGTPLITKRSTDSVSALLEVVKSTGATQLFFNHLYDPLSLIRDHRTKEVLTAHGITVRSFNSDLLYEPWDVNDDRGQPFTTFDAFWERCLNMPYDPQSPSLPPKRIIPGDTSRCRSDTLVFEDESEKSSNALLARAWSPGWSNADKALTTFINGPLIEYSENRRKADSATTSFLSPHLHFGEVSVKKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREYSRYISFNHPYSHERPLLGHLKFFPWVLNGGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYITGTLPDGREFDRIDNPQFEGYRFDPNGEYVRRWLPELSRLPTQWIHHPWNAPESVIQAAGIELGSNYPLPIVGIDEAKARLQEALLQMWQQEAAYRAATENGTEEGLGDSFESTPIAFPDDIQMEERHEPARNNPPPAAATRRYEDQMVPSITSSLARVEEEETSLDVQNSAEENRAEVPVNVIAQQNARETVLRTANRNTQLPHNNTTMWLRNAAEDSTAESSSSTRRERGGEVPEWSPTASSYPEPFVDDENGIGASSSYLQRHPQSHQLMNWTRLPQTG 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal6g0474 678 Pfam Blue/Ultraviolet sensing protein C terminal 511 624 IPR020978 -
Lal6g0474 678 ProSitePatterns DNA photolyases class 1 signature 2. 352 371 IPR018394 -
Lal6g0474 678 TIGRFAM crypt_chrom_pln: cryptochrome, plant family 6 481 IPR014134 GO:0009785|GO:0009882
Lal6g0474 678 Gene3D - 134 293 - -
Lal6g0474 678 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 134 IPR006050 -
Lal6g0474 678 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 193 488 IPR036134 -
Lal6g0474 678 MobiDBLite consensus disorder prediction 608 678 - -
Lal6g0474 678 Gene3D HUPs 8 206 IPR014729 -
Lal6g0474 678 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 178 IPR036155 -
Lal6g0474 678 PRINTS DNA photolyase signature 143 159 IPR002081 -
Lal6g0474 678 PRINTS DNA photolyase signature 332 348 IPR002081 -
Lal6g0474 678 PRINTS DNA photolyase signature 352 370 IPR002081 -
Lal6g0474 678 PRINTS DNA photolyase signature 391 405 IPR002081 -
Lal6g0474 678 PANTHER CRYPTOCHROME 1 604 IPR002081 -
Lal6g0474 678 Coils Coil 470 490 - -
Lal6g0474 678 Pfam FAD binding domain of DNA photolyase 283 480 IPR005101 -
Lal6g0474 678 Pfam DNA photolyase 7 162 IPR006050 -
Lal6g0474 678 MobiDBLite consensus disorder prediction 653 678 - -
Lal6g0474 678 ProSitePatterns DNA photolyases class 1 signature 1. 332 344 IPR018394 -
Lal6g0474 678 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 301 502 - -
Lal6g0474 678 PANTHER CRYPTOCHROME-1 1 604 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal6g0474 Lal-Chr6 3012182 3016197 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal6g0474 K12118 - gmx:100786551 1176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal6g0474 6 3012182 3016197 Lal6g0474 6 3012182 3016197 ECH
Lal18g1151 18 14417259 14420567 Lal6g0474 6 3012182 3016197 LSH
Lal6g0474 6 3012182 3016197 Lal4g0367 4 2495527 2499557 PCT
Lal4g0367 4 2495527 2499557 Lal6g0474 6 3012182 3016197 PCT